| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_05440 |
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| Symbol | deoA |
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| ID | 8385882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 549779 |
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| End bp | 551095 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644974641 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_003132445 |
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| Protein GI | 257054613 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.881323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGGCG AACCATTCGC CGCGGTCGAT GTCATCAGGA CCAAACGCGA CGGTGCGGCG
TTGAGCGACG AACAGATCCG TTGGGTCGTC GACGCCTACA CGCGTGGCGT GGTCGCCGAT
GAGCAGATGG CGGCGTTGGC CATGGCGATC CTGCTGCGCG GGATGGACCG GGCCGAGATC
GCGTGCTGGA CCGGCGCCAT GATCGACTCG GGGGAGCGGC TGTCGCTGCG TTGTTCCCGA
CCGCTCGTGG ACAAGCATTC GACCGGCGGC GTCGGCGACA AGATCACGTT GCCGTTGGCG
CCGCTCGTGG CGACGTGTGG GGCCGCCGTG CCGCAGCTGT CCGGACGCGG ACTCGGCCAC
ACCGGCGGCA CGTTGGACAA ACTGGAGGCC ATCCCGGGAT GGCGGGCCGA ATTGTCGGCC
GACGAGATCA GCCGTCAGCT GGAGGACGTG GGTGCCGTCG TCTGTGCCAC GACCCCGACG
TTGGCGCCCG CCGACCGCAA GCTGTACGCG TTGCGCGACG TCACCGCCAC CGTCGACTCG
GTACCGCTGA TCGCGAGCTC GATCATGAGC AAGAAGATCG CCGAGGGTGT GGATCGGCTG
GTGCTCGACG TCAAAACCGG CTCCGGGGCG TTCATGAAGA CCCGTGAGCA GGCCCGGGAA
CTGGCCACGA CCCTGGTCGA GATCGGCGCC GCTCACGGGG TGGCCACCAC GGCCGTGCTG
ACCGCCATGG ACACCCCCTT GGGGTCCGCC GTCGGCAACG CCGTCGAGGT GGCCGAGGCC
GTGGACGTCC TTCGGGGAGG CGGTCCCGCG GACGTCGTCG AACTCACCGT GGCCCTGGCC
CGCGAGATGT TGGCGCTCGC GGGATTGTCC GATGTCGACC CGGCACGTGT ACTCGCCTCG
GGTCAGGCGT ACGAGACCTG GTGCCGCATG ATCCGCGCAC AGGGCGGTGA TCCCGAGGCG
GCACTGCCCG AACCCGCTCA CGTGCACGTC GTGGAGGCCT CCGAGGCGGG CACCATGACG
CGGCTGGACG CCTACGGCGT GGGTGTGGTC GCGTGGCGGT TGGGAGCGGG CAGGGCCCGC
AAGGACGACC CCGTGCAGCC GGCCGCGGGC GTGCGGTGTC TGGTCAAGCC GGGGCAGCGG
GTCGAAGTCG GCCAGCCGCT GTTCGAACTG CACACCGACA CTCCCGAGGC CGTGGCGGCG
GTTCTGCCGA CGTTGCGGGC CGCGTACGAC ATCGACGGAC ACGAAACAGC CCCCGCCGCC
TTGCAGGCGC GCGGGGGCGT CGTACTGGAG CGGGTGGTGA GCGGCGCGTC GGGGTGA
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| Protein sequence | MTGEPFAAVD VIRTKRDGAA LSDEQIRWVV DAYTRGVVAD EQMAALAMAI LLRGMDRAEI
ACWTGAMIDS GERLSLRCSR PLVDKHSTGG VGDKITLPLA PLVATCGAAV PQLSGRGLGH
TGGTLDKLEA IPGWRAELSA DEISRQLEDV GAVVCATTPT LAPADRKLYA LRDVTATVDS
VPLIASSIMS KKIAEGVDRL VLDVKTGSGA FMKTREQARE LATTLVEIGA AHGVATTAVL
TAMDTPLGSA VGNAVEVAEA VDVLRGGGPA DVVELTVALA REMLALAGLS DVDPARVLAS
GQAYETWCRM IRAQGGDPEA ALPEPAHVHV VEASEAGTMT RLDAYGVGVV AWRLGAGRAR
KDDPVQPAAG VRCLVKPGQR VEVGQPLFEL HTDTPEAVAA VLPTLRAAYD IDGHETAPAA
LQARGGVVLE RVVSGASG
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