| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_05360 |
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| Symbol | sdhA |
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| ID | 8385874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 541086 |
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| End bp | 542873 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644974633 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_003132437 |
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| Protein GI | 257054605 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0259373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTTCC ACAAATACGA CGTGGTGATC GTCGGAGCGG GCGGCGCGGG TATGCGCGCA
GCGATCGAAG CCGGTCAGCG CGCCCGCACC GCGGTGCTCA CCAAGCTCTA CCCGACACGC
TCCCACACGG GTGCCGCCCA GGGTGGTATG TGCGCGGCAC TGGCCAACGT CGAAGAGGAC
AACTGGGAGT GGCACACCTT CGACACCATC AAGGGTGGTG ACTACCTCAC CGACCAGGAC
GCCGCCGAGA TCATGGCGAA GGAAGCCATC GACGCGGTGC TCGACCTGGA GAAGATGGGG
CTGCCGTTCA ACCGCACCCC GGACGGCAAG ATCGACCAGC GGCGGTTCGG CGGGCACACC
CGCGAGCACG GCAAGGCCGC GGTGCGCCGG GCCTGCTACG CGGCCGACCG CACCGGCCAC
ATGATCCTGC AGACGCTGTA CCAGAACTGC GTCAAGCACG GCATCGAGTT CTTCAACGAG
TTCTACGTCC TCGACATCGC GCTCACCGAC ACGGCGGACG GCCCCGTGGC GTCCGCCGCC
ATCGCCTACG AGCTGGCCAC CGGTGAGATC CACGTGTTCC AGGCGAAGTC GATCATTTTC
GCCACGGGTG GCTTCGGCAA GGTCTTCAAG ACCACCTCCA ACGCGCACAC GCTCACCGGC
GACGGCATGG GCATCTACCT CCGCAAGGGC CTGCCCCTGG AGGACATGGA GTTCTACCAG
TTCCACCCGA CCGGCCTGGC CGGCCTGGGC ATCCTGCTCA CCGAGGGTGC GCGCGGTGAG
GGCGCGATCC TGCGTAACGC CTCCGGCGAA CGCTTCATGG AGCGCTACGC CCCCACCATC
AAGGACCTCG CGCCGCGCGA CATCGTCGCC CGCTCGATGG TCCTCGAGGT CCTCGAAGGC
CGGGGTGCCG GCCCGAACAA GGACTACGTC CTGCTCGACT GCACCCACCT CGGCGAGGAG
GTGCTGGAGA CCAAGCTGCC CGACATCACC GAGTTCGCTC GCACCTACCT GGGCGTGGAC
CCGGTGAAGG AGCCGGTGCC GGTGTATCCC ACCGCGCACT ACGCGATGGG CGGCATCCCC
ACCAACGTGC ACGGCGAGGC GCTCCGGGAC AACGAGAACA TCGTCCCCGG CGTGTACGCG
GCCGGTGAGT GCGCGTGCGT TTCCGTGCAC GGCGCGAACC GACTGGGCAC GAACTCGCTG
CTGGACATCA ACGTGTTCGG CAAGCGGGCG GGCATCGCCG CCGCGGAGTA CGCCAACTCG
CGCGACTTCG CCGAGTTGCC GGACGACGCG GCGAAGACGG TCGAGACCAT GGTCAACCAC
CTGCGCAGTT CCACCGGCGG TGAACGGGTG GTCGACATCC GCAACGAACT GCAGGCGACC
ATGGACGCCA ACGCGGCGGT GTACCGCACC GAGGACACGC TCAAGCAGGC GTTGACGGAC
GTGCAGTCGC TCAAGGAGCG CTACGGCCGC ATCTCGATCA TGGACAAGGG CCAGCGGTAC
AACACCGACC TGCTGGAGGC CATCGAGCTC GGCTTCCTGC TGGACCTGGC CGAGGTCCTG
GTGAACGCGG CGCTGGCTCG GAAGGAGTCC CGTGGCGGGC ACGCCCGCGA GGACTACCCC
GACCGCGATG ACGTCAACTT CATGCGGCAC TCCATGTCCT ACAAGATCCT TCCGGAGAAG
GACGACCCCG ACGCACAGCT GGGGCTGCCC GGCTTCCGCG CGGACCTCCG CCTGGACTAC
AAGCCGGTGA CCTTCACCCG GTACGAACCG ATGGAGCGGA AGTACTGA
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| Protein sequence | MQFHKYDVVI VGAGGAGMRA AIEAGQRART AVLTKLYPTR SHTGAAQGGM CAALANVEED
NWEWHTFDTI KGGDYLTDQD AAEIMAKEAI DAVLDLEKMG LPFNRTPDGK IDQRRFGGHT
REHGKAAVRR ACYAADRTGH MILQTLYQNC VKHGIEFFNE FYVLDIALTD TADGPVASAA
IAYELATGEI HVFQAKSIIF ATGGFGKVFK TTSNAHTLTG DGMGIYLRKG LPLEDMEFYQ
FHPTGLAGLG ILLTEGARGE GAILRNASGE RFMERYAPTI KDLAPRDIVA RSMVLEVLEG
RGAGPNKDYV LLDCTHLGEE VLETKLPDIT EFARTYLGVD PVKEPVPVYP TAHYAMGGIP
TNVHGEALRD NENIVPGVYA AGECACVSVH GANRLGTNSL LDINVFGKRA GIAAAEYANS
RDFAELPDDA AKTVETMVNH LRSSTGGERV VDIRNELQAT MDANAAVYRT EDTLKQALTD
VQSLKERYGR ISIMDKGQRY NTDLLEAIEL GFLLDLAEVL VNAALARKES RGGHAREDYP
DRDDVNFMRH SMSYKILPEK DDPDAQLGLP GFRADLRLDY KPVTFTRYEP MERKY
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