| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_04650 |
|---|
| Symbol | |
|---|
| ID | 8385803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 456240 |
|---|
| End bp | 457286 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644974563 |
|---|
| Product | O-sialoglycoprotein endopeptidase |
|---|
| Protein accession | YP_003132367 |
|---|
| Protein GI | 257054535 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
|---|
| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.345171 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCGA TCGTCATGGG CATCGAGAGT TCGTGCGACG AGACGGGTGT CGGACTCGTG
CGGTTGCGCG ACGACGGTGG TGTCGAGCTG CTCGCCGACG AGGTCGCCAG CAGTGTGGAG
GAGCACGCGC GGTTCGGGGG TGTGGTCCCG GAGGTCGCCA GCCGTGCCCA CCTGGAGGCG
ATGGTGCCCA CCGTGCGTCG GGCGTTCGAC ACGGCGGGGT TGCGGATGTC GGATGTGGAC
GCCATCGCGG TCACGGCGGG TCCCGGACTG GCGGGCGCGC TGCTGGTGGG TGTGTCGGCC
GCGAAGGCCT ACGCCGCCGC GCTCGACGTA CCGCTGTACG GGGTGAATCA CCTCGCCGGG
CACATCGCTG TGGACACGTT GCAGCATGGC CCGTTGCCCA CGCCGTCGCT GGCGTTGCTC
GTGTCGGGTG GGCATACGCA GTTGCTGCGA GTCGACGACA TCGCGTGCAA GATCACCGAA
ATCGGCTCCA CAGTGGATGA CGCGGCCGGG GAGGCCTACG ACAAGGTGGC GCGGGTGCTG
GGCCTGCCGT ATCCGGGTGG TCCGCCCATC GACCGCGCGG CGCGTGAGGG CGATCCGAAC
GCCATCGCGT TTCCACGTGG CATGACCGGG CCTCGGGACG CGCCGTTCGA CTTCTCGTTC
TCCGGCTTGA AGACGGCGGT GGCCCGGTGG GTCGAGGGCG CGCAGGCTCG GGGCGAGAAC
ATCCCGGTGG CGGATGTGGC GGCGTCGTTC CAGGAGGCGG TCGCGGACGT GTTGACGGCC
AAGGCGGTGC GGGCCGCGAC CGAGCTGGGT ATCGGCACGC TCGTCATCTC CGGTGGGGTG
GCGGCGAATT CACGGCTGGC GAGCCTGGCG GCGGAACGCT GCGCGGACGC GGGTGTCGAG
TTGCGTGTGC CGCGACCGAG GTTGTGCACG GACAACGGTG CGATGATCGC CGCGTTGGGA
GCGCATCTCG TCGCCGCGGG TTGCCCACCG AGTCCGCTCG ATCTGTCGGC GGATCCGTCG
CTGCCGGTCA GCACCGTCTG CCTGTGA
|
|---|
| Protein sequence | MSSIVMGIES SCDETGVGLV RLRDDGGVEL LADEVASSVE EHARFGGVVP EVASRAHLEA
MVPTVRRAFD TAGLRMSDVD AIAVTAGPGL AGALLVGVSA AKAYAAALDV PLYGVNHLAG
HIAVDTLQHG PLPTPSLALL VSGGHTQLLR VDDIACKITE IGSTVDDAAG EAYDKVARVL
GLPYPGGPPI DRAAREGDPN AIAFPRGMTG PRDAPFDFSF SGLKTAVARW VEGAQARGEN
IPVADVAASF QEAVADVLTA KAVRAATELG IGTLVISGGV AANSRLASLA AERCADAGVE
LRVPRPRLCT DNGAMIAALG AHLVAAGCPP SPLDLSADPS LPVSTVCL
|
|---|
| |