| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_04260 |
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| Symbol | rpsD |
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| ID | 8385764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 413046 |
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| End bp | 413654 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644974525 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_003132329 |
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| Protein GI | 257054497 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.342435 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTCGAT ACACCGGCCC CGCGACTCGT ATCTCGCGCC GGCTCAAAGT TGACCTCGTC
GGCAACGACA AGGCGTTCGA ACGTCGCCCC TACCCGCCCG GCCAGCACGG CCGTGGGCGT
GTGAAGGAAA GCGAATACCT GCTGCAGCTG CAGGAGAAGC AGAAGGCCCG CCACACCTAC
GGCATCCTCG AGCGCCAGTT CCGGCGCTAC TACGAGGAAG CTGCGCGGCG CCCCGGAAAG
ACCGGTGACA ACCTGCTTCA GCTCCTGGAA TCGCGGCTGG ACAACGTCGT GTACCGCGCT
GGTCTTGCGC GGACCCGTCG TCAGGCCCGT CAGCTGGTCA GCCACGGCCA CTTCCTCGTC
AACGGCGAGA AGGTCAACAT CCCCAGCTAC CGGGTGTCGA AGTTCGACAT CATCGACGTT
CGTCCGAAGT CTTTGAAGAC ACTGCCTTTC GTCGCTGCGA AGGAATCGTT GGGTGAACGC
CCGATTCCGG CGTGGCTGCA GGTCGTGCCT TCGAATCTCC GGATTCTCGT GCACCAGCTT
CCCGAGCGCG CGCAGATCGA GGTGCCGGTG CAGGAACAGC TGATCGTCGA GTTCTACTCG
AAGAAGTGA
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| Protein sequence | MARYTGPATR ISRRLKVDLV GNDKAFERRP YPPGQHGRGR VKESEYLLQL QEKQKARHTY
GILERQFRRY YEEAARRPGK TGDNLLQLLE SRLDNVVYRA GLARTRRQAR QLVSHGHFLV
NGEKVNIPSY RVSKFDIIDV RPKSLKTLPF VAAKESLGER PIPAWLQVVP SNLRILVHQL
PERAQIEVPV QEQLIVEFYS KK
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