Gene Svir_04130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_04130 
Symbol 
ID8385751 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp405872 
End bp406411 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content65% 
IMG OID644974513 
ProductLSU ribosomal protein L6P 
Protein accessionYP_003132317 
Protein GI257054485 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0097] Ribosomal protein L6P/L9E 
TIGRFAM ID[TIGR03654] ribosomal protein L6, bacterial type 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACGCA TCGGTAAGCT GCCGATCAAC GTCCCCTCCG GGGTCGATGT GACCATCGAC 
GGGCAACGTG TCACGGTCAA GGGGCCGAAA GGCACCCTTG AGCACACTGT TCCTGAGCCG
ATCACCGTCG AGCGCGACGA CAACGGTGCG CTGCTGGTGA AGCGCCCGGA CGACGAACGG
GAGACCCGCG CGCTGCACGG CCTCACCCGG ACACTGGTGA ACAACCTCGT CGTCGGCGTC
ACCCAGGGCT ACGAGAAGCG CATGGAGATC CACGGCGTCG GTTACCGGGT GCAGGCCAAG
GGGTCGGACC TCGAGTTCGC CCTCGGCTAC AGCCACCCGG TGTTGGTCAA GGCGCCGGAG
GGCATCACGT TCAAGGTGGA GAGCCCGACG AAGTTCTCGG TGTCCGGCAT CGACAAGCAG
CAGGTCGGCC AGACCGCGGC TGTCATCCGT CGGCTGCGTC GTCCGGACCC CTACAAGGGC
AAGGGTGTGC TCTACGAGGG CGAGCGTATC CGCCGCAAGG TCGGAAAGAC GGGTAAGTGA
 
Protein sequence
MSRIGKLPIN VPSGVDVTID GQRVTVKGPK GTLEHTVPEP ITVERDDNGA LLVKRPDDER 
ETRALHGLTR TLVNNLVVGV TQGYEKRMEI HGVGYRVQAK GSDLEFALGY SHPVLVKAPE
GITFKVESPT KFSVSGIDKQ QVGQTAAVIR RLRRPDPYKG KGVLYEGERI RRKVGKTGK