| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_03810 |
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| Symbol | |
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| ID | 8385719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 380014 |
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| End bp | 383925 |
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| Gene Length | 3912 bp |
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| Protein Length | 1303 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644974481 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_003132285 |
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| Protein GI | 257054453 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.894217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGGACG TCAATTTCTT CGATGAGCTC CGGATCGGTC TCGCCACGGC CGACGACATC
CGTCAGTGGT CTTACGGCGA AGTCAAGAAG CCGGAGACCA TCAACTACCG CACGCTCAAG
CCGGAGAAGG ACGGCCTCTT CTGCGAGAAG ATCTTCGGAC CGACTCGCGA CTGGGAGTGC
TACTGCGGTA AGTACAAGCG CGTCCGCTTC AAGGGCATCA TCTGTGAGCG CTGTGGTGTC
GAGGTGACTC GCGCCAAGGT GCGTCGCGAG CGGATGGGCC ACATCGAGCT GGCCGCACCG
GTCACCCACA TCTGGTACTT CAAGGGTGTT CCTTCGCGTC TGGGCTACCT GCTCGACCTC
GCGCCGAAGG ATCTCGAGAA GATCATCTAC TTCGCGGCCT ACGTGATCAC CAGCGTGAAC
ACGGAGCTGC GACAGAACGA CCTGCCGACG TTGGAGAACG AGATCAACGT CGAGCGGAAG
AACATCGAGA ACAAGCGTGA CGCCGAGATC GAGCAGCGGG CGCAGAAGCT CGAGGCCGAC
CTCGCCGAGT TGGAGGCCGA GGGCGCCAAG GCCGACGTTC GCCGCAAGGT CAAGGAGAGC
GGCGAACGCG AGATGCGGCA GATCCGCGAC CGTGCCCAGC GCGAGCTGGA CCGCCTGGAG
GAGGTCTGGA CGACCTTCAC CAAGCTGGAG CCGCGTCAGC TCATCGTGGA CGAGCAGCTT
TACCGGGAGC TGTACGACCG CTACGGCGAG TACTTCACCG GCGGCATGGG CGCCGAGGCC
ATCCAGAAGC TGGCCAGCGA GTTCGACGTC GACGCTGAGG CCGAAGCGCT GCGCGAGACC
ATCCGCACCG GTAAGGGCCA GAAGAAGCTG CGTGCCCTGA AGCGACTGAA GGTCGTCGCC
GCGTTCCAGT CCACCGGCAA CGACCCGCGC GGCATGGTGC TCGACGCGAT CCCGGTCATC
CCGCCGGAGC TGCGTCCGAT GGTCCAGCTC GACGGTGGTC GTTTCGCCAC CTCTGACCTC
AACGACCTGT ACCGTCGTGT CATCAACCGC AACAACCGCC TCAAGCGACT GATCGACCTC
GGCGCGCCCG AGATCATCGT CAACAACGAG AAGCGGATGT TGCAGGAGGC CGTCGACGCG
TTGTTCGACA ACGGCCGTCG CGGTCGCCCC GTCACCGGTC CTGGTAACCG TCCGCTGAAG
TCGCTGTCCG ACCTGCTCAA GGGCAAGCAG GGACGGTTCC GGCAGAACCT GCTCGGTAAG
CGTGTCGACT ACTCGGGCCG TTCGGTCATC ATCGTCGGTC CGCAGTTGAA GCTGCACCAG
TGCGGTCTGC CCAAGGACAT GGCGCTGGAG CTGTTCAAGC CCTTCGTCAT GAAGCGGCTG
GTCGACCTCA ACCACGCACA GAACATCAAG TCCGCCAAGC GGATGGTCGA ACGTGCCCGT
CCGCAGGTGT GGGACGTGCT GGAAGAGGTC ATCAACGGCC ACCCCGTGCT GCTCAACCGT
GCTCCGACGC TGCACCGTCT CGGTATCCAG GCGTTCGAGC CGCAGCTCGT GGAAGGTAAG
GCCATCCAGC TGCACCCGCT GGTGTGTGAG GCGTTCAACG CCGACTTCGA CGGCGACCAG
ATGGCGGTGC ACCTGCCGCT GTCCGCGGAG GCGCAGGCCG AGGCGCGCAT CCTGATGCTG
TCGGCGAACA ACATCCTGTC GCCCGCGTCG GGTCGTCCGC TCGCCATGCC GCGTCTGGAC
ATGGTGACCG GCCTGTTCCA CCTCACCCGT CTCGACGAGA ACGCGAAGGG TGCGGGTGCG
GCCTACTCCT CGCCCGCCGA GGCGATCATG GCCTACGACC GCGGGCAGCT CGCGCTGCAC
GCCCCGGTGA AGATCCGGAT CCACGACCGC CAGCCGCCGA AGTCGGAAGA GGCGGCGCTG
CGCGAGAAGG GTTGGGAGCC CGGAAAACCG TGGTTGGCTG AGACGACGCT TGGCCGGGTG
CTGTTCAACG ACCTGCTGCC GGAGGACTAC CCGTTCGTCA ACGAAGTCCT GCCGAAGAAG
CGGCAGGCCG CGATCGTCAA CGACCTCGCC GAGCGGTACT CGATGACCCA GGTCGCGCAG
ACCCTCGACG GGCTCAAGGA CGCCGGCTTC CACTGGGCGA CGCGTTCCGG CGTGACCATC
TCCATCACCG ACGTGGTCGT GCCGCCGCAG AAGCAGGAGC TGCTCGAGCA GTACGAGGCC
AAGGCCGCGC AGGTGGAGAA GCGCTACCAG CGTGGTCAGC TGTCCCACGC CGAGCGCAAC
AACGAGCTCG TCAAGGTGTG GAGCCAGGCG ACCGAGGACG TCGCCAAGGC CATGGAGGAG
AACCTCCCCG ACGACAACCC GATCGCGATG ATCGTGAAGT CCGGTGCGGC GGGCAACATG
ACCCAGGTCC GGTCGCTGGC CGGTATGCGT GGTCTGGTGT CCAACCCGAA GGGTGAGTAC
ATCCCGCGCC CGATCAAGGC CAACTTCCGT GAGGGCCTGA CGGTGGCGGA GTACTTCATC
GCCACGCACG GTGCCCGTAA GGGTCTGGCC GACACCGCTC TGCGGACCGC CGACTCGGGT
TACCTGACCC GTCGTCTGGT GGACGTGTCG CAGGACGTCA TCGTGCGCGA GACCGACTGT
GGCACCAGCC GCGGTATCAC GAGGACCATC GCGGACGAGC TGCCCGACGG CCGTCTGGTG
CGTGCCGAGC ACGTCGAGAC CAGCGTCTAC GCCCGCAACC TCGCCGCCGA CGCGGTGGAC
GAGCAGGGCA ACGTGATCCT CAACGCGGGT GAGGACCTGA GTGACCCCGC CATCGAGCGA
CTCATCCAGG CGGGCATCAG CAAGGTCAAG GTCCGCAGCG TGCTCACCTG CGAGTCGGCG
ATGGGCGTGT GCGCCACCTG CTACGGCCGC TCCATGGCGA CCGGCAAGCT GGTCGACGTC
GGTGAGGCAG TCGGTATCGT CGCCGCCCAG TCGATCGGTG AACCCGGTAC GCAGCTGACG
ATGCGGACGT TCCACCAGGG TGGTGTCGCC GGCGACGACA TCACCACGGG TCTGCCGCGT
GTCACCGAGC TGTTCGAGGC CCGGGTGCCG AAGGGCAAGG CGCCGATCGC CGATGTCGAC
GGCCGGGTGC GGATCGAGGA GAGCGAGCGG TTCTGGAAGA TCACGCTCAT CCCGGACGAC
GGCAGCGAGG AGATCGTCTT CGACAAGTTG TCGAAGCGGC AGCGACTCGC GATCGGTCCG
AACGGCCCGC TGGCGGACGG CGACCACGTC AAGGTCGGTC AGCCGCTGCT GGAAGGTACG
CCGGACCCGC ACGAGGTGCT GCGTGTGATG GGGCCGCGCG AGGCGCAGAT GCACCTGGTG
GAGGAAGTCC AGAAGGTGTA CCGCGCGCAG GGTGTGTCCA TCCACGACAA GCACATCGAG
GTCATCGTGC GCCAGATGCT GCGCCGCGTG ACGATCATCG ATTCCGGTTC GACCGAGTTC
CTGCCCGGCG AACTGCCCGA ACGCTCCAAG TTCGAGCAGG TCAACCGCAA GGCGGTGGCG
GAAGGCGGCG AACCCGCGTC GGGTCGTCCG GTGCTGATGG GCATCACGAA GGCGTCGCTG
ACCACGGACT CGTGGCTGTC GGCGGCCTCC TTCCAGGAGA CCACCCGTGT GCTCACCGAC
GCGGCCATCA ACGGCCGTAG TGACGCGCTG ATCGGTCTCA AGGAGAACGT GATCATCGGT
AAGTTGATCC CGGCGGGTAC GGGCATCAAC CGGTACCGCA ACATCCAGGT GCAGCCGACG
GAGGAGGCCA GGGTCGCCGC CTACGCGATC CCGTCCTACG ACGATGGCTA CTACACGCCT
GACGTGTTCG GCACCGGTAC CGGCGCCGCC GTCCCGTTGG ACGACTACGA CTTCGGTCGC
GACTTCCGGT AG
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| Protein sequence | MLDVNFFDEL RIGLATADDI RQWSYGEVKK PETINYRTLK PEKDGLFCEK IFGPTRDWEC
YCGKYKRVRF KGIICERCGV EVTRAKVRRE RMGHIELAAP VTHIWYFKGV PSRLGYLLDL
APKDLEKIIY FAAYVITSVN TELRQNDLPT LENEINVERK NIENKRDAEI EQRAQKLEAD
LAELEAEGAK ADVRRKVKES GEREMRQIRD RAQRELDRLE EVWTTFTKLE PRQLIVDEQL
YRELYDRYGE YFTGGMGAEA IQKLASEFDV DAEAEALRET IRTGKGQKKL RALKRLKVVA
AFQSTGNDPR GMVLDAIPVI PPELRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLIDL
GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGPGNRPLK SLSDLLKGKQ GRFRQNLLGK
RVDYSGRSVI IVGPQLKLHQ CGLPKDMALE LFKPFVMKRL VDLNHAQNIK SAKRMVERAR
PQVWDVLEEV INGHPVLLNR APTLHRLGIQ AFEPQLVEGK AIQLHPLVCE AFNADFDGDQ
MAVHLPLSAE AQAEARILML SANNILSPAS GRPLAMPRLD MVTGLFHLTR LDENAKGAGA
AYSSPAEAIM AYDRGQLALH APVKIRIHDR QPPKSEEAAL REKGWEPGKP WLAETTLGRV
LFNDLLPEDY PFVNEVLPKK RQAAIVNDLA ERYSMTQVAQ TLDGLKDAGF HWATRSGVTI
SITDVVVPPQ KQELLEQYEA KAAQVEKRYQ RGQLSHAERN NELVKVWSQA TEDVAKAMEE
NLPDDNPIAM IVKSGAAGNM TQVRSLAGMR GLVSNPKGEY IPRPIKANFR EGLTVAEYFI
ATHGARKGLA DTALRTADSG YLTRRLVDVS QDVIVRETDC GTSRGITRTI ADELPDGRLV
RAEHVETSVY ARNLAADAVD EQGNVILNAG EDLSDPAIER LIQAGISKVK VRSVLTCESA
MGVCATCYGR SMATGKLVDV GEAVGIVAAQ SIGEPGTQLT MRTFHQGGVA GDDITTGLPR
VTELFEARVP KGKAPIADVD GRVRIEESER FWKITLIPDD GSEEIVFDKL SKRQRLAIGP
NGPLADGDHV KVGQPLLEGT PDPHEVLRVM GPREAQMHLV EEVQKVYRAQ GVSIHDKHIE
VIVRQMLRRV TIIDSGSTEF LPGELPERSK FEQVNRKAVA EGGEPASGRP VLMGITKASL
TTDSWLSAAS FQETTRVLTD AAINGRSDAL IGLKENVIIG KLIPAGTGIN RYRNIQVQPT
EEARVAAYAI PSYDDGYYTP DVFGTGTGAA VPLDDYDFGR DFR
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