| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_03500 |
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| Symbol | |
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| ID | 8385688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 349461 |
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| End bp | 352142 |
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| Gene Length | 2682 bp |
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| Protein Length | 893 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644974450 |
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| Product | diguanylate cyclase (GGDEF) domain-containing protein |
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| Protein accession | YP_003132257 |
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| Protein GI | 257054425 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGACA CGCACGGCGG CTCCGCCGAC GCCGGTACGG CGACGGGTGA CATACCGAGA
CCCGACACAT CGAGACCCGT TGCGGCGCCA TCGGAGGGTG GTTCTCTTTC GGCTGAGGCG
CGCGCGGACG AGCGTCGGTT CCAGCTCTAC ACAGTGGCGG TCCTCACATT CGGCCTCGTC
GTGGCCGGGG CTGTGTCCGC ATGGCTGCCC TTCCAAGGCT CGGTGCACCT GTGGTGGATC
GGCCCCCTGC TCGCCCTGGC CTTCCTCGGC GCCGAGCAGC TCGGGGTCAA CGTCGACGTC
CGCAGCGGCA TCTCGTGGAC CATCTCCTTC ACCGAGATCC CCCTCGTCAT CGGCCTGCTG
GTGGCGCCGT TCGAAGTGGT GCTCGCCGCG CACGTCGTCG CAGGCGTGAC CACGCTACTG
GCCCGTCGAG TCACCGGTCG CGTCCTCTAC AACGCCGGCG CGTTCCTCCT GGAGGTCACC
AGCGCGTTCG CCGTCGCCGG CCTCGTGAAG CAAGCACTCG GCAGCGTCGA GGACATGCCC
TGGCTCGCCG CGCTCGCAGG AACGCTGACC GCGCCGCTGG CCAGTACGTT GCTGGCCATG
GCGGCCGTGC GCGTACTGCG CCGTCGCATG CGGGTGGGCA CCGTGGTCCG ACTCGCGGGA
CGCATCCTCG TCGTCGGGTT CGTCAACGCG TCCGTGGGGC TCACCGGTTA TCTGGTGATC
TCGAAGACGC CGGAGGCGTG GCCCATCGTT CTGGCGGTCA GCCTCGGCCT CGCCGCCCTC
TACTGGGCGT ACTCCGACCT GCTGCGCGAA CAGCGCGACA TGGAGGCGCT CACCGACGTG
AGCCTCATGG TCGCGAGGTC GGGGCAGCAG GCCGCGGCAC GACCCGCGGG CAAGGCCGGT
GACGTCGACG TCGACGTCGA CATCGACGTC GACGAGTGGA CCACCATCGC TGAACGCATT
CGCGATCAAC TCGCGGCGGC ACGCGTCGTG CTGCGGCTGC GGTTGGATCC CGAACAGCCC
ATGCGCACCG TTGTGGTCGG GGACGACCTG GCCGCCGGGT ACGACACCGA ACTCGACGCC
GACGATCCAC TGCTACGGCT GCCCGGAGCG CACGTCCGGC ACCTTCGGGT CACCGAGGCC
AATCCGCAGA TCCGGGCGGC ACTGCTGCGT CGAGGAGCGA GCGAGGCGCT CGTGGTGCCG
TTGCGCAGTG CGAACCAGCT GCTCGGCATC GTCGAGGCCT ACGACCGGTT GTCACGCTGG
CGGGGCTTCG GCAAGTACGA CGTCCAGTTG CTCGGCACCA TGGCGAGCCA CCTGGCCACC
GCCTTGGACA ACCGCCGACT GTTGGCGACG CTGCGGCACG ATGCGTATCA CGATCCGTTG
ACCGGCCTGC TCAACCGCCC GGGTTTCCGG CAGGTGGCCG CCGAGCCGCT GCGGGAACAC
GCGAACTCCG TGGTGCTGCG GGTGGATCTC GATGTCTTCT CCACGGTCAG CGACGCCCTC
GGGTACACGT GGGCCGACCG GATGCTGATG GCCGCGGGGA AGCGTATGCG CGACACCCTG
GGGGCCGGCG TGCCGCTGGC CCGGCTCGAG GGGGCCTCGT TCGCGGTCCT GCTCGCCGAT
TGCGACGCCG AACGGGCCCA GGAGATCGCC CAACGACTGC GGGAGCAGCT GTCGGCGCCG
TATCCGGTGG ACAGGCTCAC CGTCGAGGCC AACTCCGTGG TGGGGTACGT GCTGACGACG
GCGGAGGAGA ACGCCGAGCG GGTCGACGTG GACAGCTTGT TGCAGCGCGC TGACATGGCC
GTGCGGGCCA CCCGCGGCGG TGAGGAGATC AAGTCCTACG TGCCGAGCAT GGGGCAGATC
TTCCTGCGCC GGTTCCAGAT GGTCACGCAG TTCCGCCAGG CCATCGAGGA AGGCCAGGTC
ACGGTCCACT ACCAGCCCAA GGTGACGTTG CCCGACAAGC AGGTGCTGGG GGTCGAGGCG
CTGGTGCGGT GGCAGCACCC CGAGTTCGGT CGGGTCAATC CCGACGAGTT CGTGCCGGCC
GTCGAGGCCG CGGGCCTTGT CGGGGTGTTG ACGTCGTTCG TGCTGGATGC GGCGCTGGAC
CGGGTGCGAC GGTGGCTGGA CGACGGGTTG CGGATCTCGG TGGCGGTGAA CCTGTCGGTG
CGGAATCTCG CCGACGCGGA GTTCCCGGCA CGGGTGGCCG AAGCGCTGGA GCGGTTCGGT
GTGCCGGGTG AGTTGCTGAC GTTGGAGCTC ACCGAGTCGG ACGTGATGCA GGATCCGGAG
CGCGCGTTGC CGATCCTGCG TGAGCTCAGT GATCTGGGTA TCGAGCTGGC CGTGGACGAC
TTCGGCACGG GGTACTCGTC GTTGGCGTAC CTGAGACAGT TGCCCGTCGA CCAGGTCAAG
ATCGACAAGA GCTTCGTCTT CGGTATGGGG ACCGACCTCG GTGATCTCGC CGTGGTGAGG
TCGATCGTCG AACTCGGTCA TTCGTTGGGG CTCACGGTGG TCGCCGAGGG GGTCGAGGAG
GATCTCGCGC GGGATCAGCT GGAGGCCATG GGCTGTGACG TCGCGCAGGG GTACCTGATC
TCCCGCCCGC TGTCGGAGGA CCGTCTCGAA GCATGGTTGC AGGCCCGGAC GGCCCGTTCG
CTCGATCCGG CTTCGGAGCC CGTGTTGACC CTGCTGACCT GA
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| Protein sequence | MPDTHGGSAD AGTATGDIPR PDTSRPVAAP SEGGSLSAEA RADERRFQLY TVAVLTFGLV
VAGAVSAWLP FQGSVHLWWI GPLLALAFLG AEQLGVNVDV RSGISWTISF TEIPLVIGLL
VAPFEVVLAA HVVAGVTTLL ARRVTGRVLY NAGAFLLEVT SAFAVAGLVK QALGSVEDMP
WLAALAGTLT APLASTLLAM AAVRVLRRRM RVGTVVRLAG RILVVGFVNA SVGLTGYLVI
SKTPEAWPIV LAVSLGLAAL YWAYSDLLRE QRDMEALTDV SLMVARSGQQ AAARPAGKAG
DVDVDVDIDV DEWTTIAERI RDQLAAARVV LRLRLDPEQP MRTVVVGDDL AAGYDTELDA
DDPLLRLPGA HVRHLRVTEA NPQIRAALLR RGASEALVVP LRSANQLLGI VEAYDRLSRW
RGFGKYDVQL LGTMASHLAT ALDNRRLLAT LRHDAYHDPL TGLLNRPGFR QVAAEPLREH
ANSVVLRVDL DVFSTVSDAL GYTWADRMLM AAGKRMRDTL GAGVPLARLE GASFAVLLAD
CDAERAQEIA QRLREQLSAP YPVDRLTVEA NSVVGYVLTT AEENAERVDV DSLLQRADMA
VRATRGGEEI KSYVPSMGQI FLRRFQMVTQ FRQAIEEGQV TVHYQPKVTL PDKQVLGVEA
LVRWQHPEFG RVNPDEFVPA VEAAGLVGVL TSFVLDAALD RVRRWLDDGL RISVAVNLSV
RNLADAEFPA RVAEALERFG VPGELLTLEL TESDVMQDPE RALPILRELS DLGIELAVDD
FGTGYSSLAY LRQLPVDQVK IDKSFVFGMG TDLGDLAVVR SIVELGHSLG LTVVAEGVEE
DLARDQLEAM GCDVAQGYLI SRPLSEDRLE AWLQARTARS LDPASEPVLT LLT
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