| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_01880 |
|---|
| Symbol | |
|---|
| ID | 8385526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 195495 |
|---|
| End bp | 197516 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644974292 |
|---|
| Product | acetoacetyl-CoA synthase |
|---|
| Protein accession | YP_003132102 |
|---|
| Protein GI | 257054270 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR01217] acetoacetyl-CoA synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCTG ACAGTGCTGA CAGTTCCGGT CACGATGTCT CGCAGGGTGC CGCGGACGAC
GCCCCGGAAA TGTTGTGGCG CCCCACCGAG GAGCAGGTGG AGGGCACCCG TATCGCCGAC
TTCCGAAAGT GGCTTCGCGA CAACCGTGGT GTCGACGTGG CCGACTACGA CGAGTTGTGG
TCGTTCTCGG TGAATTCGAT CCCGGAGTTC TGGTCGGCGG TGGCGGACTA CTTCGGCGTG
CGGTGGCACA CAAAACCCGC CGAGGTGCTG TCGGACGCGC GTATGCCCGG GGCGCGGTGG
TTCCCCGGCG GCACGTTGAA CTACGCCGAG CATGCGTTGC TGCCGGTCGC GGGGGCGAAG
AAGGCCGACG ACGACTTCGC GGTGATCTTC CATCGTGAGG ACGGGGTCGA GCGGCTGCTC
ACCTATGGAC AGTTGCGGGC CGAGGTGGCC GCGGCGAGGG CGGCTCTGCG CGAGCTCGGG
GTCGGCAAGG GCGACCGTGT GGTGGCGTTG GCGCCGAACT GCCCGGAGAC GTTGGTCGCC
TTCCTGGCCG CGGCGAGTCT CGGTGCGACG TGGTCGTCGT GTTCGCCGGA CTTCGGTGTC
CGTGCCGTGG CCGACCGTTT CACGCAGATC GAGCCGAAGG TGCTGATCGC CGTCAACGGC
TATGTCTACA ACGGGCGGGC GTTCGATGTA CGTCCGACCG TCGAGCGGTT GCGGGAGGAG
TTGCCGACGC TCGCGGCCAC CGTGCTGGTG GACTACGAGG GTGGCGGGCG TGTGCAGGGT
GCGCTCGACT GGAAGACGTT GTTGGCCGAG CACGCGGGTG CCGAGTTGGA GTTCGAGCCG
GTGGAGTCCG ACCACCCGCT GTGGGTGCTG TACTCCTCGG GCACCACGGG GCTGCCGAAG
GGCATCGTGC AGGGGCACGC CGGGATCACG GTCGAGCACC TGAAGGCGTT GGCGCTGCAC
TGTGATCTCG GGCCGGGCGA GCGGTTCTTC TGGTTCACCA CCACGGGCTG GATGATGTGG
AACTTCCTGG TCTCCGGCCT GTTGGTGGGG TCCACCATCG TGCTCTACGA CGGCAGCCCC
GGATACCCGG ATCTGCGGAC GCTGTGGCGG TTGGCGGAGC AGCACCGGGT GACCTATTTC
GGGACGTCGG CGCCGTTCGT GCAGAGCTGC CTCAAAAAGG GACTGCGGCC GGGCGCGGAG
TTCGACCTGT CGGCCATGCG CGCGTTGGGT TCGACGGGCG CGCCGTTGAC CGTGGAGGGG
TTCCGGTGGA TCGCCGATGC GGTGGGGCGG CACGTGCAGA TCTGCTCGGT GTCGGGTGGT
ACGGATCTGT GCACGGCGTT CGTCGGGTCG GCCCCGGACG TGCCGGTGTG GTTGGGGGAG
TTGTCGTGTC GTTCGCTCGG CGCGGCGGTG GAGTCGTACG ACGACGCGGG CAACCCGGTG
GTCGACCAGG TCGGCGAGCT GGTGATCACC AAGCCGATGC CGTCGATGCC GGTGTTCTTC
TGGAACGACC CCGACGGCAC GAGGTTGCGG GAGGCGTATT TCGAGGACTT CCCCGGGGTG
TGGCGACACG GCGACTGGAT CAAGATCACA AGCCGGGGTT CGGCGATCAT CTACGGCCGC
AGCGACTCGA CGTTGAACCG GGGAGGCGTG CGCATGGGCA CGTCCGAGTT CTATCGCATC
GTCGAGGGCT TCGACGAGGT CCTGGACTCG TTGGTGATCG ACACGTCGGC CGCCGGTGAC
GAGGGTGAGT TGCTGTGCTT CCTCGTGCTC GCCGAGGGGG CCTCGCTGGA GGACTTGGAG
CAGCCGCTGC GCCAGGAGCT GCGTAAGGCC CTGTCGCCAC GGCATGTGCC CGACCGGTTC
GTGCTCGTGG ACGAGGTGCC GAGGACGCTG AACGGCAAGA AGTGCGAGGT TCCGGTGAAG
AAGATCCTCA AGGGCGTGGA CCCCGACCGC GCGGTGAGCC GGGACGCGTT GGCGAACCCG
GATGCGCTCG CCCCCTTCGT GGCGTATGCC AGCGGTAAAT GA
|
|---|
| Protein sequence | MRADSADSSG HDVSQGAADD APEMLWRPTE EQVEGTRIAD FRKWLRDNRG VDVADYDELW
SFSVNSIPEF WSAVADYFGV RWHTKPAEVL SDARMPGARW FPGGTLNYAE HALLPVAGAK
KADDDFAVIF HREDGVERLL TYGQLRAEVA AARAALRELG VGKGDRVVAL APNCPETLVA
FLAAASLGAT WSSCSPDFGV RAVADRFTQI EPKVLIAVNG YVYNGRAFDV RPTVERLREE
LPTLAATVLV DYEGGGRVQG ALDWKTLLAE HAGAELEFEP VESDHPLWVL YSSGTTGLPK
GIVQGHAGIT VEHLKALALH CDLGPGERFF WFTTTGWMMW NFLVSGLLVG STIVLYDGSP
GYPDLRTLWR LAEQHRVTYF GTSAPFVQSC LKKGLRPGAE FDLSAMRALG STGAPLTVEG
FRWIADAVGR HVQICSVSGG TDLCTAFVGS APDVPVWLGE LSCRSLGAAV ESYDDAGNPV
VDQVGELVIT KPMPSMPVFF WNDPDGTRLR EAYFEDFPGV WRHGDWIKIT SRGSAIIYGR
SDSTLNRGGV RMGTSEFYRI VEGFDEVLDS LVIDTSAAGD EGELLCFLVL AEGASLEDLE
QPLRQELRKA LSPRHVPDRF VLVDEVPRTL NGKKCEVPVK KILKGVDPDR AVSRDALANP
DALAPFVAYA SGK
|
|---|
| |