| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_01720 |
|---|
| Symbol | |
|---|
| ID | 8385510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 180323 |
|---|
| End bp | 181474 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644974276 |
|---|
| Product | beta-glucosidase-like glycosyl hydrolase |
|---|
| Protein accession | YP_003132086 |
|---|
| Protein GI | 257054254 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.651137 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.324393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGAT TGATGCTTGC GGCCGCGTGT GTCGCTTTGT TGGGAACGGC AGCCTGTGGT
GACGGTGGGG ACCAGGCGGG TGACGGTAAT ACGGCCTCGC CGCCCCCGGA CCAGCAGGAC
ACGCAACAGA CGAGCGCCAC ACAGCAGCCC GGTGGTGAGT GCGCAGGTGT GATCGAGGGG
CTTTCCCCCA GGGAGCGTGC TGCTCAGCTG CTCGTGGTCG GTGTGGACCC GACCGACCCG
GCCGCGGCCG TCGCGCTGGT ACGCGAACAC CGGGTCGGCG GCATCTTCAT CGGCGGTAAC
CCCACCGCCC TGTTCACCGA CAACGCGCTG GACCGGGTGC AGGAAGCCGC GGGCGACATC
CCCGTGTCCG TCGCCGTCGA CGACGAGGGC GGGCGGGTGC AGCGCATCGA CGAACTCGTC
GGACCCATCC CCAGTGCCCG ACAGATGGCG CAGTCGATGA CACCGCAGGA AGTGCGGGAG
CTGGCGCGCG AACGCGGTGA GCAACTGAGC GCCCGTGGCG TCACCGTCGA TTACGCGCCC
GTGGTCGACC TGACCGACGG CCCCGCGAAC GGTGTCATCG GTGACCGGTC GTTCAGCGCC
GACCCGCAGA CGGCCACGGA GTACGCGGCG GCGTTCGCTT CCGGGCTGTC GGAGGCGGGT
GTGCAGCCCG TCATCAAGCA TTTCCCCGGG CACGGCCGAG CCAGTGGTGA CTCCCACCAG
GAGCTGGTGC AGACGCCACC GCTGGACGAA CTGCGCACCC ACGACCTGGT GCCCTATGAG
GACCTCAGCG TCTATCCCGA CGACACGCAG GTGATGGTGG GCCATCTCGA CGTCCCCGGC
CTCACCGACG GACAGCCCGC CTCCCTGTCG CCCGCGGCGT ACCGGTTGCT GCGGGACGAG
TACGACTACG ACGGTGTCGT GCTCACCGAC GACCTCGGTG CGATGAGGGC GGTCACCGAC
AACTACACCC TCGACGAGGC CGTGCTGTTG GCGTTGCAGT CCGGCGCCGA TCAACCGCTG
TGGTCGTCCG GCGGGGACGT CGGTCCCGTG CTCGACAAGC TGGAAGCCGC CATGGCCGAT
GGTCAGCTGT CGCAGGAGCG GGTCGACGAA GCGCTCACCA GGGTGCTGAC GGCGAAGGGC
GTCTGCGGTT AG
|
|---|
| Protein sequence | MKRLMLAAAC VALLGTAACG DGGDQAGDGN TASPPPDQQD TQQTSATQQP GGECAGVIEG
LSPRERAAQL LVVGVDPTDP AAAVALVREH RVGGIFIGGN PTALFTDNAL DRVQEAAGDI
PVSVAVDDEG GRVQRIDELV GPIPSARQMA QSMTPQEVRE LARERGEQLS ARGVTVDYAP
VVDLTDGPAN GVIGDRSFSA DPQTATEYAA AFASGLSEAG VQPVIKHFPG HGRASGDSHQ
ELVQTPPLDE LRTHDLVPYE DLSVYPDDTQ VMVGHLDVPG LTDGQPASLS PAAYRLLRDE
YDYDGVVLTD DLGAMRAVTD NYTLDEAVLL ALQSGADQPL WSSGGDVGPV LDKLEAAMAD
GQLSQERVDE ALTRVLTAKG VCG
|
|---|
| |