| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_01330 |
|---|
| Symbol | |
|---|
| ID | 8385471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 140839 |
|---|
| End bp | 141765 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644974237 |
|---|
| Product | 4-hydroxybenzoate polyprenyltransferase-like prenyltransferase |
|---|
| Protein accession | YP_003132048 |
|---|
| Protein GI | 257054216 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0382] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.139856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.645084 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGA CGACCGAGCG TGCCGACGTA CAAAGCAGTG CCTCCGGGAA GGGGCTGCTG
CCGACACTGC TCAGCGTGCT CAAAACGGCA CGGCCCCGGC AGTGGGTGAA GAACGTCCTC
GTCTTCGCGG CGCCGTTCAC CGCGGCCCAG ATCACCAACA TCGGTGTGCT GGTCGACGCG
GCGATCGCGT TCGTGGCGTT CTCGTTCGTC GCCAGCTCGG TCTACCTCAT CAACGACGCG
GTGGACGTCG AGGCCGACCG CGCGCATCCG ACGAAACGGA ACCGGCCGAT CGCCGCCGGG
ATCGTGTCGA TCCCACTCGC GTACGCCTCG GCGGTCGTGT TCTTCCTGGC CGGACTCGGT
GTGAGTCTTC TGGCCGACTG GCGATTGTTG ATCGTGCTGG TGGTGTATGA AGCGGTCCAG
CTCGGTTACT GCTTCGGGCT GAAGCACCAG CCGGTGATCG ACCTGACCAT CGTCGGTTCC
GGATTCCTGA TGCGGTTGAT CGCCGGTGGT GTCGCCACCG GCATCAGCCT GTCCCAGTGG
TTCTTGCTGG TCACCGCGTT CGGTTCGCTG TTCATGGTGG CGGGCAAGCG CTTCGCCGAG
GTGATGCTCT ACGAGCGCAC GGGGGCGAAG ATCCGGTCCT CGTTGAAGAA GTACTCGGCC
AGTTATCTGC GGTTCGTGTG GGCGACCTCG GCGGCGATAC TGATCATGTC GTACTGCCTG
TGGGCGTTCG AACAGCAGCA ACGCGTGCCG GGGACGGTGT GGAGTGTCAT CTCCATCGTC
CCGTTCGTCA TCGCCGTGCT CCGCTACGCG GTGGACGTCG ACTGCGGCAA CGCGGGTGAG
CCCGAGGAGA TCGCGCTACG CGACCGGGTG TTGCAGGTGT TGGGCGCGAC CTGGGTCGTC
ACGCTCGCCT GCTCGTACTA CCTGTGA
|
|---|
| Protein sequence | MSETTERADV QSSASGKGLL PTLLSVLKTA RPRQWVKNVL VFAAPFTAAQ ITNIGVLVDA
AIAFVAFSFV ASSVYLINDA VDVEADRAHP TKRNRPIAAG IVSIPLAYAS AVVFFLAGLG
VSLLADWRLL IVLVVYEAVQ LGYCFGLKHQ PVIDLTIVGS GFLMRLIAGG VATGISLSQW
FLLVTAFGSL FMVAGKRFAE VMLYERTGAK IRSSLKKYSA SYLRFVWATS AAILIMSYCL
WAFEQQQRVP GTVWSVISIV PFVIAVLRYA VDVDCGNAGE PEEIALRDRV LQVLGATWVV
TLACSYYL
|
|---|
| |