Gene Svir_00470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_00470 
Symbol 
ID8385385 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp46116 
End bp47111 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content71% 
IMG OID644974151 
Productflavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase 
Protein accessionYP_003131963 
Protein GI257054131 
COG category[C] Energy production and conversion 
COG ID[COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 
TIGRFAM ID[TIGR03558] luciferase family oxidoreductase, group 1 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.402107 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.593742 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACCC GAAGCCTGTC CGTGCCGCTG TCGGTCCTGG ACCGGTCGAG CATCCGGCGG 
GGACAGGCAC CGGCGGACGC CGTACGCGAC ACCGTGCGAT TCGCCCGTCG GATGGAGGCG
CTGGGTTACC ACCGGTTCTG GGTCGCGGAG CACCACAGCG TCCCCGGTGT GGCGGGCTCC
GCCCCCACGG TGCTGGCCGC GGCGGTCGCC GCGAACACAT CCTGCATCCG TGTCGGCACC
GGTGGGGTCA TGCTGCCGAA TCACCAACCG CTCGTGGTCG CCGAGCAATT CGGCACGCTG
GAAGCACTCC ACCCCGGCCG TATCGACATG GGGTTGGGCC GTTCGGTGGG CTTCACCGGC
GGGGTCAGGG CGGCCCTCGG TAGAGGCAAG GAACACGCCT CCCACTTCGA CGAGCAGATC
CGGGAGCTCC TCGGCTACTT CGCCGGTTCC CCGGTCCATC GCGGAGTGCG CGGTATCCCG
GCCGAGGGAC TGCGCGTCCC GGCGTTCGTC CTCGCCACGG GCTCCGGGGC GGACGTCGCC
GCCGACACGG GCCTGGCACT CGTCATCGCC CCGGTGTCGG GAGTCGACAA GATGAGCGAA
CACATCGCCC GCTATCGCGC CACGTTCCGA CCGTCCTCGC TGTGGCCGCG ACCGTACGTG
ATCGTCGCGA CGGCCGTGGC GGTCGCCGAC ACGCCCCGGC GGGCTCGGGA GTTGCTGCTG
CCGGAGGCGT GGTCACTGGT GCACTCCCGC ACTCGCGGCG TGTTCCCACC GTTGCTGCCG
CCCGCCGACA TCCCCACACC GACCGAACGC GAGGCGGCCC TGCTCGCCGA CGTGCTGCGG
AACCAGATCC ACGGCACCCC CGCATCGGTG CACGACGAAC TGGTCGCGCT CGTGGAACGT
ACGGCGGCCG ACGAATTGCT GATCACGATG AGCACCTACG ACCGGGCAGA CATGCTCGAC
TCGTACACCG CGCTGGCCGA GCTGGCCGGC GGCTGA
 
Protein sequence
MSTRSLSVPL SVLDRSSIRR GQAPADAVRD TVRFARRMEA LGYHRFWVAE HHSVPGVAGS 
APTVLAAAVA ANTSCIRVGT GGVMLPNHQP LVVAEQFGTL EALHPGRIDM GLGRSVGFTG
GVRAALGRGK EHASHFDEQI RELLGYFAGS PVHRGVRGIP AEGLRVPAFV LATGSGADVA
ADTGLALVIA PVSGVDKMSE HIARYRATFR PSSLWPRPYV IVATAVAVAD TPRRARELLL
PEAWSLVHSR TRGVFPPLLP PADIPTPTER EAALLADVLR NQIHGTPASV HDELVALVER
TAADELLITM STYDRADMLD SYTALAELAG G