Gene Svir_00460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_00460 
Symbol 
ID8385384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp43136 
End bp45901 
Gene Length2766 bp 
Protein Length921 aa 
Translation table11 
GC content68% 
IMG OID644974150 
ProductDNA-binding transcriptional activator of the SARP family 
Protein accessionYP_003131962 
Protein GI257054130 
COG category[T] Signal transduction mechanisms 
COG ID[COG3629] DNA-binding transcriptional activator of the SARP family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.622636 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGTTCC GCATCCTGGG CCCGTTACAG GTCGTGGATG GCGACCGGGA GGTCGTTGTG 
CCCGCGGGCA GGCTTCGCGT GTTGTTGGCG GCTCTGGTGT GCAATGCCAA CCGCGTGGTG
TCCGTTTCGG AATTGATCTC ATACCTGTGG GACGACCCGA GCGCGAGCGC ACGGAACACC
GTGCGTTCCT ACGTGCGCAG GTTGCGGGCC CGCCTTCGGG AAATCGATTC CCAGCGCGTG
TTCATCCGAC AACGGACACC CGGCTACGTT CTCGACGTCG ACGACACTGA GGTGGATCTG
CTGCGATTCC GGTCGATCGT GTCGGAGGCG TACGGAACCG CTGATCCCCG GAAAGCCGCG
GAACTGTTTC GGTCGGCATT GAAGCTGTGG CGGGGAAAGC CGCTGGCCGA CATCGAGTCG
GAAGCGCTCC GGCGTGACGT CGCCGCACCG TTGAGCGAGG AACACACCAG GACGGTCGAG
GCGAGGATCG ACCGGGAACT GGCGTCCGGG GCGCACACCG AGTTGGTGAG TGAGCTCACC
GCGTTGGTCG AGCGGCATCC GCTCCGGGAG CGGTTCTGGG GGCAGCTGAT GTCGGCCCTG
GCACACGGTG GTCGTCAAGC CGATGCGCTC GCGGCTTACC AGCGGTTGCG CACGACGCTG
GCGGAGGAGC TGGGCATCGA GCCCGGTCCG GAGCTCAGAC GCATCCACGA GATGGTTCTG
AACGGAAAGA TCCCCGATCC GCGACGGGAC CACGAGGAGG ACGGTGCCCC ACCCGGGCCG
GTCGGCGGTG GGACCCTCGG GGGGATTCCC GCCGCGCCGC CGTCGCCGCG GCAACTCATC
GCCGACACCA CGTCGTTCGT CGGACGGGAA CGACTGATCG ACGACCTGAC CCGGTGGTTG
GCGAATCCGT CGGCTCGACG ACTGCTCGTC GTGAGCGGAC AGCCGGGCGT GGGTAAGACG
GCTCTCGCCG TGCGGCTTGC GCACCGCGTC GCCGAACACT TCCCCGACGG GCAGTTGTTC
GTCGACCTGC ACGGTTTCTC CTCCACCCCG GCGATCGCCC CCGCCGATGT GCTGCTCCGA
TTCCTTCGTG CGCTGGGGCA TCCGGCGGAG CTGATCCCCG AGGACCTGGA CGAACGCACG
GCCCTGTTGC GGTCCGTGCT CGCCGAAAGG CGGGTGTTGC TCGTCCTGGA CAACGCCGCG
ACCGCCGACC AGGTTCGGCC GTTGTTGCCG GGCACGACCG AGTGCGCGGT GATCGTCACC
AGTCGGAACG TCCTGTCGGG TCTTGTCGCC GTGGACGGGG CCCGTGGGGT GCGCGTGGGA
GCACTGACCA CGGACGAGTC GACCTCACTG CTGTCCACCC TCCTGGAGGG GCGTGGTGAC
GTACGTGACG AGGACCTGCG GCGATTGGCC GACGCGTGCG GTGGCATCCC CCTGGCGTTG
CGGATCGCGG CCGCACACCT CGTGACCCGG AACGAGGTGA CGGTGTCCGA TCTCCTCGAG
GACCTGTCCC GGTACCGCCT GGACGTGCTC ACGGTCCCGC ACGACGGCCA CGCCTGCGTG
CGCACGGCGA TCGACGTGTC CTACGCGGCG TTGTCCGAGC CGGTCGCCCG GTTGCTGTTG
TCGCTCAGCC TGCTGCCCAC ACCCGAGTTC TCCGTTCCGG TCGCGGCGGC GGTGGGGGAC
TGCGATCTCC CCGAGGCGAT GCGGCTCGTG GCGGCGTTGG CGGAGGCCAA TCTGGTCGAG
GAGAGGGGCG CGGGTCGTCA CCGGCTCCAC GACCTGGTGT GGGTCTACCT CGCCCACCGG
GCCGGACAGG AGCTGTCGGC GGAGGAGCGG TTCGCCGCGG CCCGGCGGAT GGCGGACTTC
TACCTGCACA CCGTCATCAG CGCGGGATGG TTCGTCCGGA GGGAACCGTT GCCGATCGAG
TTACCGACCC GGCCGGACAC GATACGGACG GTCCCGTTCG ACAACCTCCA GCAGGCGGTG
GCCTGGTACG AGGCCGAGCG AGCGAACCTC GTCGCCGTGA TCCGGGAGTG CGAACGACGG
GGCTGGCACC GGCACGCCTA CGTGCTGCCC ATCGTCCTGT GCTCCTTCTA CCTGTTGCGC
AAGCATTGGT CTGATTGGGA GGAGACCCAC ACGGTGGCGT TGCGGGCGGC GCGCCGCGGC
AACGACCGTC GGGCCGAATC GGCGGTGCTG CACCGACTGG GCGCGTTGTT CGACAACCAG
GGACGGTCCC GGAAGGCGTT GGACACGTAC CGGGCCGCTA TCGACATCGC CAGGGAATTG
GACGATCCAC GGTTGGAGGC GGCGGCGTTG ACGGGTGCCG GGGCGGCTTA CTTCTCCGTC
GGCCGGTTCT TCGACGCCCA CAGCTGCTAT CAGCGTGCCG TGGAACTGCA CCTCAAGGCG
GGGAACCCGT ACGGGCAGGT GGGCCCGCTT GTCAACGTCA CGAGACTGCA CGTGGCTCGT
CGGGACTTCG CCGCGGCCTT CGCGAGTGCT CGGGAAGCGA TCAAGACGGC CATGGCGTAC
GGCTCGGTGA ACCATCCCGG CATCGCCTGG TTGAACCTCG GCGAGGCCTA CCTCGAGGCC
GGCTATGTGG ACGAGGCCGT CGAGGCGATC GAACAAGCCG GCCGCGTGGC CACGATGAGC
AGTGATCGCG ACACCAAGGC TCGGAGTCTG AACCTCCTCG CCGCGGCCGA GGAGCGGCGG
GGAGACATGC TCGCCGCGCG CCGGTTCCGG CAGCGGGCGA CGTTGTACGC TGCGGAGATC
GGTTGA
 
Protein sequence
MEFRILGPLQ VVDGDREVVV PAGRLRVLLA ALVCNANRVV SVSELISYLW DDPSASARNT 
VRSYVRRLRA RLREIDSQRV FIRQRTPGYV LDVDDTEVDL LRFRSIVSEA YGTADPRKAA
ELFRSALKLW RGKPLADIES EALRRDVAAP LSEEHTRTVE ARIDRELASG AHTELVSELT
ALVERHPLRE RFWGQLMSAL AHGGRQADAL AAYQRLRTTL AEELGIEPGP ELRRIHEMVL
NGKIPDPRRD HEEDGAPPGP VGGGTLGGIP AAPPSPRQLI ADTTSFVGRE RLIDDLTRWL
ANPSARRLLV VSGQPGVGKT ALAVRLAHRV AEHFPDGQLF VDLHGFSSTP AIAPADVLLR
FLRALGHPAE LIPEDLDERT ALLRSVLAER RVLLVLDNAA TADQVRPLLP GTTECAVIVT
SRNVLSGLVA VDGARGVRVG ALTTDESTSL LSTLLEGRGD VRDEDLRRLA DACGGIPLAL
RIAAAHLVTR NEVTVSDLLE DLSRYRLDVL TVPHDGHACV RTAIDVSYAA LSEPVARLLL
SLSLLPTPEF SVPVAAAVGD CDLPEAMRLV AALAEANLVE ERGAGRHRLH DLVWVYLAHR
AGQELSAEER FAAARRMADF YLHTVISAGW FVRREPLPIE LPTRPDTIRT VPFDNLQQAV
AWYEAERANL VAVIRECERR GWHRHAYVLP IVLCSFYLLR KHWSDWEETH TVALRAARRG
NDRRAESAVL HRLGALFDNQ GRSRKALDTY RAAIDIAREL DDPRLEAAAL TGAGAAYFSV
GRFFDAHSCY QRAVELHLKA GNPYGQVGPL VNVTRLHVAR RDFAAAFASA REAIKTAMAY
GSVNHPGIAW LNLGEAYLEA GYVDEAVEAI EQAGRVATMS SDRDTKARSL NLLAAAEERR
GDMLAARRFR QRATLYAAEI G