Gene Huta_2881 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHuta_2881 
Symbol 
ID8385190 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhabdus utahensis DSM 12940 
KingdomArchaea 
Replicon accessionNC_013158 
Strand
Start bp2962490 
End bp2964202 
Gene Length1713 bp 
Protein Length570 aa 
Translation table11 
GC content65% 
IMG OID644973959 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003131775 
Protein GI257053942 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGCCT GGTTGCTGGT GTATCAGGTG GGACTCGTCG TCGCGATCGC GGTGTCGATC 
GTGGCGGCCG GGCTCGCGTG GCGCCATCGC GACGAGCGTG GCGGGACACC ACTCACGGCC
GTCCTCGTGG CTGAGATCGG CTGGGCCGTG GCGATCCTGG TCACGACGGT CGTTCCGGGG
ACGGACATCG CACTCGCTGC CAACAAGGCA CTCCTGGCTG GCGTTGTCGT CCTCGTGCCC
GCGCTCCTGG TGTTTGCTCT GGAGTACACC GGCCGCGAGT CGCTGGTCAC CCGCCGGCTT
CTCGCCGCGT TGTCGGTCGA ACCGATCGTC TTCACGGCGC TGGTCTGGAC GAACGGAGCC
CACAGGCTGG TGTGGGAAAC GCTGCGTGCC GACGGGACGG GACCGCGCGG TCTCGAAACC
GTCAACGGGC CACTGTTCGG CGTCCACACC GCCTATTCGT ATCTTTTGCT TTCGGTCGCC
GTGTTGTTGA TCGTCGTTTT CGCGCTCCGG TCCCGGTATT TCTACCAGCG ACAGGTCATG
GCTATCGTGG TCGCGACGCT GGTTCCCTGG GGAGCCAACG CCGTGTCGCT GGCGCTCGGG
CTGGAATACG ACCTCACACC CATCGCCTTC ACTGTCACCG GGGTCGCGTT CACCTGGGCA
GTCGTCCGCG AGGAGTTCCT CGATATCACG CCCATCGCAA CCGAGGTGGT CTTCGACCGC
ATCGACACGG CCGTCGTCGT CGTGGACGCG TCGGACCGCA TCGTCGACAT CAACGAGAGC
GCTCGAACGT TACTCGGCAT CGACGACGAC GCCGTCGGCA CGCGGATCCA GACGCAGCTC
ACATCCGTTC CAGACGCCGT CCCAGTCTAC GAATCGGTCA CTGACGGTCA CGACACCGGG
ACGCGTGACC TCTCCATCGG CGAGCGCTCT ATCAGGATCG AGGGCTCGCC GCTGGTCGAC
CGCCGTGGGG ATGTCGTCGG TCACGCACTC ATCATGGTCG ATCTGACCGA GGAGCGCGCT
CGCGAGGCCG AACTAACCCG GCGAAACGAA CAGCTCGATC GGTTCGTCGG CGTCGTCTCC
CACGATCTGC GGAACCCATT ACAGGTAGCG GCTGGCCGGC TCGAACACGC GCGCCGAGAC
GGCGACGAGG AACACTTCGA GGCGGTCGAG CGCGCTCACG ACAGGATGGA ACGACTCATC
GAGGATCTGC TCGCGCTCGC CCGCCAGGAC GAAGATCTCG ACCGCGAGCG GATCGAACTG
GGGACAGTCG CGGAGTCAGC GTGGTCCTAC GTCGAGATTG CTGACGGGAC GCTCGAACTC
GCTGTGGATG ACTTCACGGT TGTGGCCGAC CCGGATCGAT TGAGCCAGTT GTTCGAGAAC
CTCTTTCGGA ACGCCGTGGA ACATGGTTCC ACGAGCCCTG ACTCGCAGGC TCGTCAGGAC
GCCGTCGAAC ATGGGGGCGA AGGTGTGACC GTCACCGTCG AGTGCCTCCC CGACCGCCGG
GGGTTCGCAG TCACGGATGA TGGCCCGGGA TTCGGTGACG CGGACACCGA GAAGGTGTTT
GCGGACGGCT ACACGACGAC CCGAGACGGG ACCGGGTTCG GCCTCTCCAT CGTCGCGGAG
ATCGCCACCC AGCACGGCTG GTCGGTTTCG GCCACCAACG CGGAGGGGGG CGGCGCGCGG
ATCGAAGTTG TAACCGACGG GGAACCGGCG TAG
 
Protein sequence
MDAWLLVYQV GLVVAIAVSI VAAGLAWRHR DERGGTPLTA VLVAEIGWAV AILVTTVVPG 
TDIALAANKA LLAGVVVLVP ALLVFALEYT GRESLVTRRL LAALSVEPIV FTALVWTNGA
HRLVWETLRA DGTGPRGLET VNGPLFGVHT AYSYLLLSVA VLLIVVFALR SRYFYQRQVM
AIVVATLVPW GANAVSLALG LEYDLTPIAF TVTGVAFTWA VVREEFLDIT PIATEVVFDR
IDTAVVVVDA SDRIVDINES ARTLLGIDDD AVGTRIQTQL TSVPDAVPVY ESVTDGHDTG
TRDLSIGERS IRIEGSPLVD RRGDVVGHAL IMVDLTEERA REAELTRRNE QLDRFVGVVS
HDLRNPLQVA AGRLEHARRD GDEEHFEAVE RAHDRMERLI EDLLALARQD EDLDRERIEL
GTVAESAWSY VEIADGTLEL AVDDFTVVAD PDRLSQLFEN LFRNAVEHGS TSPDSQARQD
AVEHGGEGVT VTVECLPDRR GFAVTDDGPG FGDADTEKVF ADGYTTTRDG TGFGLSIVAE
IATQHGWSVS ATNAEGGGAR IEVVTDGEPA