Gene Huta_2711 details

Gene Information

• Locus tag: Huta_2711
• ID: 8385016
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: +
• Start bp: 2780036
• End bp: 2780674
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644973785
• Product: Bacterio-opsin activator HTH domain protein
• Protein accession: YP_003131605
• Protein GI: 257053772
• COG category: [R] General function prediction only
• COG ID: [COG3413] Predicted DNA binding protein

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.592354
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGGTA TGCGCGCGGA GATCGAAGTC CTGTCCCCGG AAGCCTGTCC AGTCGCCGGA 
CTCTCCGAAC AGGCGGACGA CCCACTGACG TCCGTTTCCC GGGCCGGTAA CGCCGAAGGC 
ACGGTCACCG AGGAGTTTAC GGTCAGCGGT GACGCGACCC TCACCGACGA CCGACTCAGC 
CAGTTGTTCG AGTACCGCTC TGCGAGCGTC TACCGGTTTC ACCACGAGTC CCTGGACTGT 
GTCTGTGAGT TCGTCGAGGA CCACGACCAT CCCATCTCGG AGATCCGCGC CCAGGATGGG 
TCGCTCGTCC TCTCGCTGCA CCTGACGACG ATCCAGGACC TGCGTGACCT CGTGACGGAC 
CTCCGGGAAC GGTACGGGGC CGTCCGGATC CGGTATCTCC TCCAGGTCGA GAGCGACGAG 
GAGGGCAGTA CCGACGTGAT CCCGATCGAT CGCAGTCGGT TGACTGACCG TCAAAAAGAG 
GTCCTCGAGA CGGCCTACCG GATGGGCTAC TTCTCGTACC CACGAGACGC GAACGCGACC 
GACGTCGCCG CCGAACTCGA CATCGACGGG TCGACGTTCA CGGAACACCT TGCGGCCGCC 
CAGTCGAAGC TGATGGACGA ACTCCTCGCG GAGATGTGA 

 

Protein sequence

MPGMRAEIEV LSPEACPVAG LSEQADDPLT SVSRAGNAEG TVTEEFTVSG DATLTDDRLS 
QLFEYRSASV YRFHHESLDC VCEFVEDHDH PISEIRAQDG SLVLSLHLTT IQDLRDLVTD 
LRERYGAVRI RYLLQVESDE EGSTDVIPID RSRLTDRQKE VLETAYRMGY FSYPRDANAT 
DVAAELDIDG STFTEHLAAA QSKLMDELLA EM