| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_2628 |
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| Symbol | ligA |
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| ID | 8384933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhabdus utahensis DSM 12940 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013158 |
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| Strand | + |
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| Start bp | 2701239 |
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| End bp | 2703320 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644973703 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_003131523 |
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| Protein GI | 257053690 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.533906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCGG TCGAGCCGCC GGACAACCCC TACGTCGAGA ACCCACCGAC GGACTTCGAG
TCGGTCGATG CACTCGACGC CGAGTCCGCC CACGAGCAGG CCGAACAGTT GCGCGAGGCT
ATCAGATATC ACGACCACCA GTATTACGTG GAAAACGACC CCGTCATCGG CGACCGGACC
TACGACGCCC TGTTCGCCCG TCTGCAAGAC CTCGAAGACG GCTTCGGCCT CGACCGCGAG
AACAGCCCCA CCCAGCGCGT CGGCGGCGAA CCGCTGGACA AACTCGCATC CGTCGAGCAC
GTCGCGCCGA TGCAGTCGAT CGACCAGGGT GGCGAGGTGA CGGAGGTCCG GGAGTTCGAT
GAGCGCGTTG CCCGCGGGAT GGGCGACGCG GGCTTTGACC CCGACGAGCG GACCTACTTC
TGTGAGCCGA AGTTCGACGG CCTCTCGGTC GAAATCGTCT ACGAGGACGG CGTCTACCAG
CGGGCGGCGA CCCGCGGGGA CGGCGAGGTC GGCGAGGACG TCACCGAGAA CGTCCGAACG
ATCCCGAGCG TGCCGGGCCG ACTGCGCGGC GACTATCCGG ACACGCTGGC GGTCCGCGGG
GAGGTCTACA TCCCGACCGA CGCGTTCCAG GCGTACAACC GCGAACGCAT CGAGCGCGGC
GACGACCCCT TCGCCAACCC CCGCAACGCG GCCGCGGGCA CCCTCCGGCA ACTCGATCCC
TCGATCACCG CCGAGCGCCC CCTGGCGATC TTCTTCTTCG GCGTGCTGGA CGCGAGCGTC
GAGTTCGAAC AGAACAGCGA GGTCTACGAA CGCCTGCCGG AGTGGGGACT GCGGGTGACC
GACCTCGCCG AGGAGGTCGA CTCGATCGAG GACGCCATCG ACTACCGCGA CCGCTTGCTC
GATGAACGGG ACGACCTCCC CTTCGAGATC GACGGCGTCG TGATCAAGCT CAACGACCGG
GCAGCCTGTG ACGCGCTGGG ATCGACCGCG CGCGCGCCAC GGTGGGCCTT CGCCTACAAG
TTCCCCGCCC GGACCGAACG GACGACGATC CGGGACGTCG TCGTCCAGGT CGGCCGGACC
GGGCGGCTGA CGCCCGTCGC GCTCATGGAC CCAGTCGAGG TCGGCGGGGT GATGGTCTCG
CGTGCCTCGC TGCACAATCC CGCCGAGATC GAGCGGCTGG GTGTCGACGT CGGCGACGAG
GTGCGCGTCC AGCGGGCCGG CGACGTGATT CCGGAGGTTG CGGAGGTCCT CGATGCGGCG
AGCGATGGGA CCTTCGACTT CCCCGAATCC TGTCCCGTCT GTGACAGCCC GGTTGAGCGG
GACGGCCCGC TGGCGTTTTG TACCGGCGGA CTGGCCTGTC CCGCCCAGTT AGAGCGGGCG
ATCGTCCACT ACGCCAGCCG CGCCGGCCTC GATATCGAGG GACTGGGTGA GGAACGCGTT
CAGCAACTCC TCGATGCCGG ACTGGTCGAA GAACTGGCAG ACCTCTACGA ACTCGGCCAG
CTCGATCTCA CCTCGCTGGA AGGCTGGGGT ATGCAATCTG TCGCCAACCT CCAGGAGGAA
CTCGAAGCCA GTCGGGAACC CCCGCTCGAT GACTTCCTCG CGGCGCTGAA CGTCCCCTCC
CTCGGTGCGG CGACAGCGAC CGCACTGGCA CGCGAGTTCG GGACGTTTGA GGCAGTGATG
GACGCTGACC GCGAGCAGCT TCAGGCGGTC GACGATATCG GGCCGAAGGT GGCCGCGGAG
ATCCGGGAGT TCTTCGAGAC CGAGCGCAAC CGCGAGGCGA TCGAGCGCTT ACTGGACCAC
GTCGACCCAC AGCCCTACGA GGTCGAGGGT GGCGACGAAC TCGACGGGCT GACGTTCGTC
TTCACCGGGA CGCTTTCGAA TTACACCCGA AGCGAGGCCC AGGAACTTGT CGAGGTCCAC
GGCGGATCGG CCACCAGTAG CGTCTCGGGC AACACCGACT ACCTCGTGGT CGGCGAAAAC
CCGGGCCAGC GCAAACGCGA CGACGCCGAC GCCAACGACG TGCAGATTCT TGACGAGGAC
GAGTTCGAGG AACTGCTGGC CGGGCGTGGC GTTCTGGACT GA
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| Protein sequence | MTAVEPPDNP YVENPPTDFE SVDALDAESA HEQAEQLREA IRYHDHQYYV ENDPVIGDRT
YDALFARLQD LEDGFGLDRE NSPTQRVGGE PLDKLASVEH VAPMQSIDQG GEVTEVREFD
ERVARGMGDA GFDPDERTYF CEPKFDGLSV EIVYEDGVYQ RAATRGDGEV GEDVTENVRT
IPSVPGRLRG DYPDTLAVRG EVYIPTDAFQ AYNRERIERG DDPFANPRNA AAGTLRQLDP
SITAERPLAI FFFGVLDASV EFEQNSEVYE RLPEWGLRVT DLAEEVDSIE DAIDYRDRLL
DERDDLPFEI DGVVIKLNDR AACDALGSTA RAPRWAFAYK FPARTERTTI RDVVVQVGRT
GRLTPVALMD PVEVGGVMVS RASLHNPAEI ERLGVDVGDE VRVQRAGDVI PEVAEVLDAA
SDGTFDFPES CPVCDSPVER DGPLAFCTGG LACPAQLERA IVHYASRAGL DIEGLGEERV
QQLLDAGLVE ELADLYELGQ LDLTSLEGWG MQSVANLQEE LEASREPPLD DFLAALNVPS
LGAATATALA REFGTFEAVM DADREQLQAV DDIGPKVAAE IREFFETERN REAIERLLDH
VDPQPYEVEG GDELDGLTFV FTGTLSNYTR SEAQELVEVH GGSATSSVSG NTDYLVVGEN
PGQRKRDDAD ANDVQILDED EFEELLAGRG VLD
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