| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_2618 |
|---|
| Symbol | |
|---|
| ID | 8384923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 2679262 |
|---|
| End bp | 2681490 |
|---|
| Gene Length | 2229 bp |
|---|
| Protein Length | 742 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644973693 |
|---|
| Product | AAA family ATPase, CDC48 subfamily |
|---|
| Protein accession | YP_003131513 |
|---|
| Protein GI | 257053680 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0464] ATPases of the AAA+ class |
|---|
| TIGRFAM ID | [TIGR01243] AAA family ATPase, CDC48 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAG TCCAACTTGA GGTCGCGAAA GCCTACCCGA ACGACTCGGG GCGGGGTATC
GCGCGCCTCG ATCCCGACAC GCTGCTGCAC CTGAAGCTCT CCCCCGGCGA CATCATCGAG
ATCGAAGGGG CCGAAACCAC CGCCGCGAAG GTCTGGCGCG CGGACCGGCA GGACTGGAAC
ACCGACACGG TCCGCATCGA CGGCTTCACC CGGCAAAATG CCGACGTGGG CATCGGCGAG
CGCGTCGAGA TCCGCAAGGC CGAAGCCGAG AAGGCCGACT CGCTCGTGCT CGCGCCGCCC
GAGGAGGCGA GCGTCCAGTT CGGCTCGGAC GCGGCCGGCA TGGTCAAACG TCAGATCCTC
AAACGCCCGG TCGTCGAGCG CGACATCGTC CCCGTGATGT CCTCGACGAA CCACCCCTTC
ATGCGCTCGC CGGGCCAGGC CATCCCGCTG ATCGCCGTCG AGACCGAACC CGAGGGCGTC
GTCCTCATCA CCGAGGACAC CGACGTCGAG TTGCGCGAGG AACCGATCTC GGGATACGAC
AAGACCGGGG GCGGGATCAC ATACGAGGAC ATCGGCGGCC TGGAGAACGA GATCCAGCGC
GTCCGCGAGA TGGTCGAACT GCCGATGAAA CACCCCCAGA TCTTCAAGAA ACTGGGGATC
GAACCGCCCA GCGGCGTCCT CCTCCACGGC CCGCCCGGCA CGGGCAAGAC GTTGCTGGCC
AAGGCCGTCG CCAACGAGAC CTCGGCGAGT TTCTTCTCGA TCGCCGGCCC GGAGATCATC
TCGAAGTACT ACGGGGAGAG CGAACAGCAG TTGCGGGAGA TATTCGAGGA CGCCACCGAG
GAGTCCCCGT CGATCATCTT CATCGACGAA CTCGACTCGA TCGCGCCCAA ACGCGAGGAC
GTCACCGGCG AGGTCGAGCG CCGCGTCGTC GCCCAACTCC TGACGATGAT GGACGGCCTG
GAATCCCGGG GGCAGGTCGT CGTCATCGCC GCGACCAACC GCGTCGACTC GGTCGACCCC
GCGCTCCGGC GGCCCGGTCG CTTCGACCGC GAGATCGAGA TCGGCGTGCC CGACGAGACC
GGTCGCGAGG AGATCCTCAA GATCCACACC CGCGGGATGC CCCTCTCGGA CGACGTCGAC
CTCCCCGGCC TGGCCGAGGA CACCCACGGG TTCGTCGGCG CGGACATCGA GTCCCTGACG
AAGGAGGCCG CGATGAAGGC CCTCCGGCGG TACCTCCCGG AGATCGACCT CGACGAGGAG
GACATCCCGC CGAGTCTCAT CGACCGGATG ATCATCAAGC GCGACGACTT CAAGGGCGCA
CTCAACGAGG TGTCGCCCTC GGCGATGCGG GAGGTGCTCG TCGAGTTACC CAAGATCAGC
TGGGACGACG TCGGCGGGCT CGAGTCGGCG AAAAACGACG TCCAGGAGTC CATCGAGTGG
CCGATGACCA CCCCGGAGAA GTTCGAGCGG ATGGGCGTCG CACCCCCGTC GGGCGTCCTG
CTCTATGGGC CACCGGGGAC CGGCAAGACG CTGATGGCCA AGGCCGTCGC CAACGAGACC
GACGCCAACT TCATCTCGGT GCGCGGGCCA CAGCTGTTGA GCAAGTGGGT CGGCGAGAGC
GAGAAGGCCA TCCGCCAGAC CTTCCGGAAG GCCCGCCAGG TCGCCCCGAC GGTCGTGTTC
TTCGACGAAC TCGACTCGCT GGCCCCCGGC CGTGGCGGCC AGGGCTCGGG GTCGAACGTC
TCCGAGCGCG TCGTCAACCA GCTCCTCACC GAGATGGACG GCCTCGAAGA CATGGAGGAC
GTGATGGTCA TCGGCGCGAC CAACCGCCCG GACATGATCG ACCCCGCTCT CATCCGGTCG
GGCCGCTTCG ATCGCCTCGT CTACATCGGC GAACCCGACG TCGACGGTCG CGAGGAGATC
CTCGATATCC ACACCGACGA CTCGCCGCTC TCGCCCGACG TCTCGCTGCG CGAACTCGCC
GAGATCACCG AGGGCTACGT CGGCAGCGAC CTGGAGAGTA TCGCCCGCGA GGCGGCCATC
CAGGCCCTCC GGGAGAGCGA AGACGCCGAG GAGATCGGCA TGGCCCACTT CCGATCGGCC
CTGGAGGGGG TCCGGCCGAC TGTCACCGAC GACATCCGCG AGTACTTCGA GCAGATGGAA
GACCAGTTCA AGGGCGGCGG CCCCGACTCA CGCCAGCCCC GCGGCTCCGA CCGGATCGGC
TTCCAGTAG
|
|---|
| Protein sequence | MNEVQLEVAK AYPNDSGRGI ARLDPDTLLH LKLSPGDIIE IEGAETTAAK VWRADRQDWN
TDTVRIDGFT RQNADVGIGE RVEIRKAEAE KADSLVLAPP EEASVQFGSD AAGMVKRQIL
KRPVVERDIV PVMSSTNHPF MRSPGQAIPL IAVETEPEGV VLITEDTDVE LREEPISGYD
KTGGGITYED IGGLENEIQR VREMVELPMK HPQIFKKLGI EPPSGVLLHG PPGTGKTLLA
KAVANETSAS FFSIAGPEII SKYYGESEQQ LREIFEDATE ESPSIIFIDE LDSIAPKRED
VTGEVERRVV AQLLTMMDGL ESRGQVVVIA ATNRVDSVDP ALRRPGRFDR EIEIGVPDET
GREEILKIHT RGMPLSDDVD LPGLAEDTHG FVGADIESLT KEAAMKALRR YLPEIDLDEE
DIPPSLIDRM IIKRDDFKGA LNEVSPSAMR EVLVELPKIS WDDVGGLESA KNDVQESIEW
PMTTPEKFER MGVAPPSGVL LYGPPGTGKT LMAKAVANET DANFISVRGP QLLSKWVGES
EKAIRQTFRK ARQVAPTVVF FDELDSLAPG RGGQGSGSNV SERVVNQLLT EMDGLEDMED
VMVIGATNRP DMIDPALIRS GRFDRLVYIG EPDVDGREEI LDIHTDDSPL SPDVSLRELA
EITEGYVGSD LESIAREAAI QALRESEDAE EIGMAHFRSA LEGVRPTVTD DIREYFEQME
DQFKGGGPDS RQPRGSDRIG FQ
|
|---|
| |