Gene Huta_2524 details

Gene Information

• Locus tag: Huta_2524
• Symbol: rps13p
• ID: 8384827
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: -
• Start bp: 2590712
• End bp: 2591242
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644973599
• Product: 30S ribosomal protein S13P
• Protein accession: YP_003131421
• Protein GI: 257053588
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0099] Ribosomal protein S13
• TIGRFAM ID: [TIGR03629] archaeal ribosomal protein S13P

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00788045
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGCAG AAGACCCAGA CGCGGCCGAA GTGGAGGACG ACGAGGACCT CCGCTATTTC 
GTCCGCATCG GACAGACGGA CCTTGACGGC ACGAAGTCCG TTGAACGTGC CCTGACAGAC 
ATGAACGGAA TCGGCCAACG CGCGGCCCGC ATCATCGCCA ACGACGTCGA CATCGATCGA 
CGCGAAACCT TCGGCCGACT CGAAGACGAT CAGATCGAAG CGATCGTCGA CCGTGTCGAA 
GGCTTCGCCG ACGACGTTCC CGAGTGGCTC GCCAACCACC GCAACGACTT CTTCGACGGC 
GAGACGACCC ACGAGATCGG GACCGACCTC AGTCTCACCC GCCGGCAGGA CATCAACCGC 
ATGAAGATGA TCAACGCCTA CAAGGGCGTT CGTCACAAGC GCGGCCAGAA GGTCCGCGGC 
CAGCGGACCA AATCCACCGG CCGGACCGAG GGGACCATCG GCGTCAACGT CGAAGCGATC 
AAAGAAGAGC AGGCCGAGGA AGCGGCGGCC GCCGAGGAGG ATGAGGAATA A 

 

Protein sequence

MSAEDPDAAE VEDDEDLRYF VRIGQTDLDG TKSVERALTD MNGIGQRAAR IIANDVDIDR 
RETFGRLEDD QIEAIVDRVE GFADDVPEWL ANHRNDFFDG ETTHEIGTDL SLTRRQDINR 
MKMINAYKGV RHKRGQKVRG QRTKSTGRTE GTIGVNVEAI KEEQAEEAAA AEEDEE