Gene Huta_2439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHuta_2439 
Symbol 
ID8384741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhabdus utahensis DSM 12940 
KingdomArchaea 
Replicon accessionNC_013158 
Strand
Start bp2508728 
End bp2510185 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content66% 
IMG OID644973515 
ProductMATE efflux family protein 
Protein accessionYP_003131338 
Protein GI257053505 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.739641 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCGACA TCGCGTGGCC GCTGGTCGTC TTCCAGTTGC TGAACGTCGC CTATAACGTG 
ACCGACACCA TCTGGCTCGG CCATTACTCG GCCGACGCGG TCGGTGCGCT GAGCATCGCG
TGGCCGCTGA TCTTCCTGTT CATCTCGATC GCGGGCGGGT TCAACTCCGC GGGGGCGATC
CTGGTCGCCC AGTACACCGG CGCGGATAGC GAGGGGTCGG CCGGACTCGT GACGGGCAAC
CAGCTGGTGT TCGTCGTCGG GATGGCGACT GTCCTGGGCG TCGCCGGCTT TTTCCTCTCC
GATCAGCTGC TCGCACTGTT GCCCTCGAGT GCGGACACGA CCGAGCGGAT CATCCCGATG
GCCAACGACT ACATGGAGGT GTTCTACCTC GGGCTCCCGC TTTTGTTCTC GTTTTTCGTC
TTCTCGTCGG TCATGCGCGG GTACGGCGAC ACCAAGACGC CGATGTACGT CATGGCCGGC
AGCGTCGGAC TGAACGTCGT GATCGACCCG ATCCTCATCT TCGGGTTTGC CGACAACCCG
CTGTTCGCGC CGCCGGGACT CGACGTGATC GGCGCGACGC TCGCGGAGCT GACGGCCTTC
GGCGGGTTCG GGATCCAGGG AGCCGCCATC GCCACCATCT CCTCGCGTGG GCTGGCGGCG
GTCGCCGGCA TCCTCCTCCT CTTTTTCGCC GGCTACGGTC CGGACGTCCG GCTGGAACAC
TTGCGGCCGG ACTTCGGCGT GATTCGGAAA ATGGTCGACC TCGGGTTGCC GACGACCGCC
GAACAGTCGG CCGCGGCGCT GGGCATGATC ACCATGACCG CGATGGTGTC GATGTTCTCG
CCGGCGGTCG TGGCGGCCTA CGGCCTCACC AACCGGATCG GGACGATCGT CTTCCTGCCG
TCGATGGGAC TGGGGCGGGC AACCAACACA ATGGTCGGCC AGAATCTGGG AGCCGAAAAG
CCCGACCGCG CCGAGCGGGC AACCTGGGTC GCCTCGAAGG TCATCGTCGG CGTCCTCTTT
GTCGCCGGCG CAATCGCGTT CATCTTCCCC GAACCGATCG TCGGCGTGTT CCTCGGGACG
GGCACCGAGG AGGCGGCGAT CACGCTTGCC TTCGCCGCGA CGTACCTCCA GGTCAGGGCC
TTCGAGTTCG TCTTCATGGG CGTCTTCCAG GTCATGCTCG GCGCGTTCCG GGGAGCAGGA
AACACCCGGA CGGCGATGGT CCTCTCCGTC ATCGCGCTAT GGCTCGGCCG CGTCCCACTG
GTATATCTCC TCGCGGTCGA CCCCGGCATC CTTGGCGAGT TCGGCATCTG GATCGGGTTC
GCCGCCGGCG ACATCCTCGG CGGGATCGTC GCCGTCCTGT GGTTCACCCG CGGAACCTGG
AAGGAAGCCG TCATCGAGGA GACCGGTCCG GACAGCGAGC CAGCGGCCGA GCCGCCCGAG
GCGGTCAATA CGGACTGA
 
Protein sequence
MLDIAWPLVV FQLLNVAYNV TDTIWLGHYS ADAVGALSIA WPLIFLFISI AGGFNSAGAI 
LVAQYTGADS EGSAGLVTGN QLVFVVGMAT VLGVAGFFLS DQLLALLPSS ADTTERIIPM
ANDYMEVFYL GLPLLFSFFV FSSVMRGYGD TKTPMYVMAG SVGLNVVIDP ILIFGFADNP
LFAPPGLDVI GATLAELTAF GGFGIQGAAI ATISSRGLAA VAGILLLFFA GYGPDVRLEH
LRPDFGVIRK MVDLGLPTTA EQSAAALGMI TMTAMVSMFS PAVVAAYGLT NRIGTIVFLP
SMGLGRATNT MVGQNLGAEK PDRAERATWV ASKVIVGVLF VAGAIAFIFP EPIVGVFLGT
GTEEAAITLA FAATYLQVRA FEFVFMGVFQ VMLGAFRGAG NTRTAMVLSV IALWLGRVPL
VYLLAVDPGI LGEFGIWIGF AAGDILGGIV AVLWFTRGTW KEAVIEETGP DSEPAAEPPE
AVNTD