| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_2415 |
|---|
| Symbol | |
|---|
| ID | 8384715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | + |
|---|
| Start bp | 2481247 |
|---|
| End bp | 2483163 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644973489 |
|---|
| Product | conserved repeat domain protein |
|---|
| Protein accession | YP_003131314 |
|---|
| Protein GI | 257053481 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) |
|---|
| TIGRFAM ID | [TIGR01451] conserved repeat domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.470241 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCA CGGATGGATC GACTGGCGAA ACCGAGTTGA ACGCACTGGG CGTCGGACGC
GCCCTCGGTG TGCTCGGTCT GCTCGCGGTC CTGGGCGGTC TCGTGACGAT CCTCCAGCCC
TCGCTCGCGT CGGATACAGC ATTCGGGTAC GGCTTCGTGA CGCTGCTAGG CGTCGTCATT
CTGGCGGCCA GTCTGCGATA CTGGGTCGGA CTCGCACTGA CGACGGTCGA GTCGGCGACG
CCACCGTCAG TCGAGGAACG ACGCGAGATC TCCATTCCGG GTGTCGCGTT CGATCGAACG
CTCGCCGACC ATCGACTCAC GGCAGTCTCA CGCCTGCGGG CCAGGCGGGA CGTCCTCGAC
CGACTACGAT CGGTTGCAGC CCGAATCCAC GAACGGGACC ACGGTGGTTC GGACGGGCAA
CCGGACGCCG ACGTCTTCGG TGAGGACGCG GAGACGGTGC TGTTTGACGA CGCCGACCGC
GAGCAGGGGC TGACAGGCCG TCTGGCGGCC GTCCGGGCGA AGGGCACGCC GCTACAGCGC
CGCGTCAGCG ATGTCGTCGC CGAACTTGCA CGCCAGTACG ACGGCGAGCG CGTCTCGGTC
GAATTCGACG TGCCCGAGCG GACGACAGCG ACACGGCCAT CCGCTCCCGG CCTGCGGGCG
ACCAATCGTT TTCGACTCCT CAAACCGATG GCGCTGTCGG CGGTCGGCGT GGGCGTCGTG
TTCGGTTCGG CGGCGTTGCT TCTCGTCGGT GCGCTGTTCG GCGGTGTCGC CGTCTACGCT
GCGGCCGATT CGCCGCCGAC GGCTGCCGTT CGCGTCACTC GATCAGTCGA GACGGACCAG
CCGGCCCCGG GTGAGTCCGT CCGGGTGACC GTCTCGATCG AGAACACGGG GGATCGGCTG
CTCCCCGATC TCACGGTGAT CGATCGGGTT CCGGAGGGGT GTTCGGTCAC GGCCGGGTCA
CCACGGCACG GGACGTCGCT CCGGGCCGGC GCGACCGCGA CCTTCGGGTA CGAACTCGAG
GCCGTCAGGG GTCACCACGA GTTCGGTGAC GCGGCTGTCA TCGTCCGGAA CCTCTCGGGG
TCGTTCGAAC GTGTCGCGGA TGTGTCCGCC GACGGTGACG CGTCGATCAC GTACGATGTG
ACCGCGGTCA CGGATCATTC TATCCCCCTG CGAAAACAGA CGTCTCGAAG CGTCGGCCGT
GTGGTCACTG ACGTCGGTGG CAGCGGCATC GAACTCCACT CCGTCCGGGA GTACCGGACC
GGCGATCCGC TCAACCGGAT CGACTGGAAC CGGGCGGCCG CCGGCGAGGA TCTGGCGACG
CTGCAGTTTC GCGAGGAACG ATCGGCGACG GTCGTCCTGC TGGTCGATGC CCGGGTGGAA
GCATACGTCG CCCCCGAGGC GGACGCACCG TCGGCCGTCG ATCGTAGCGT CCTCGCGGCG
GCCGAAAGCG CCTCGGCGCT GCTGGCTGCC GACGATCAGG TCGGGCTGGC CGCGCTCTCG
CCCCGCACGT GCTGGATCGC TCCGAGTTCC GGGCACGCTC ATCGGACCCG CATACACGAA
CAGCTGGCGA ACGCGGAGGC CTTCGATCCA CGACCGCCGG ATCGGTCGTT CAAGCCCGCG
ATTCGCCTTC AGTCGATCCG CAAGCGGCTC CCGAGTGCTG CCCAGCTGCT GGTGTTCTCG
CCGGTCTGTG ACGACGAAGT CGTCGATGTC GTTCGCCGGC TGGGGGCCAG CGGACATGCG
ACCACGGTGA TCAGCCCGAA TGCCACGGGC GGCAGGACAC CGGGTCGAAC GCTGGCCCGG
ATCGAACGCA GTCTCCGCCT CTCACGACTT CGGGAGGCCG GTGTTCGCGT CGTCGACTGG
GACGCCGAGG AATCACTCGC ATTGTCTCTG GACAAAGCCG GCAGGCGGTG GTCGTGA
|
|---|
| Protein sequence | MTATDGSTGE TELNALGVGR ALGVLGLLAV LGGLVTILQP SLASDTAFGY GFVTLLGVVI
LAASLRYWVG LALTTVESAT PPSVEERREI SIPGVAFDRT LADHRLTAVS RLRARRDVLD
RLRSVAARIH ERDHGGSDGQ PDADVFGEDA ETVLFDDADR EQGLTGRLAA VRAKGTPLQR
RVSDVVAELA RQYDGERVSV EFDVPERTTA TRPSAPGLRA TNRFRLLKPM ALSAVGVGVV
FGSAALLLVG ALFGGVAVYA AADSPPTAAV RVTRSVETDQ PAPGESVRVT VSIENTGDRL
LPDLTVIDRV PEGCSVTAGS PRHGTSLRAG ATATFGYELE AVRGHHEFGD AAVIVRNLSG
SFERVADVSA DGDASITYDV TAVTDHSIPL RKQTSRSVGR VVTDVGGSGI ELHSVREYRT
GDPLNRIDWN RAAAGEDLAT LQFREERSAT VVLLVDARVE AYVAPEADAP SAVDRSVLAA
AESASALLAA DDQVGLAALS PRTCWIAPSS GHAHRTRIHE QLANAEAFDP RPPDRSFKPA
IRLQSIRKRL PSAAQLLVFS PVCDDEVVDV VRRLGASGHA TTVISPNATG GRTPGRTLAR
IERSLRLSRL REAGVRVVDW DAEESLALSL DKAGRRWS
|
|---|
| |