Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Huta_2322 |
Symbol | |
ID | 8384620 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhabdus utahensis DSM 12940 |
Kingdom | Archaea |
Replicon accession | NC_013158 |
Strand | + |
Start bp | 2361397 |
End bp | 2362284 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644973395 |
Product | H/ACA RNA-protein complex component Cbf5p |
Protein accession | YP_003131222 |
Protein GI | 257053389 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.713223 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCACTCC GTGGGCCCCC CGAGGACCGA TCGCCGGCCG AACTCCTCTC ATTCGGCGTC TTGAATCTCG ACAAACCGCC GGGCCCCTCG GCCCACCAGG TCGCCGCCTG GGTGCGTGAC CTCGCGACCG TCGAACGGGC GGCCCATGCC GGGACGCTTG ACCCAAAAGT CACCGGCTGT CTCCCCATGC TGCTGGGCGA CGCCACCCGG ATGGCCCAGG TCTTCGACGA CAGCGACAAG GAGTACGTCG CCGTCCTCGA GCTCCACGAA CGCCTGGCTG ACCCCTCCAC CCTGGAGGCC GTCGCCGACG AGTTCGAGGG CGAGATCTAC CAGAAGCCGC CGAAGAAGAG CGCCGTCGTC CGCCGGCTGC GCTCCCGGGA GATCCACCGC CTGGACGTTC TCGAAGCCGA GGATCGCCGC GCGCTGCTCT CGATCCGGTG TGAGAGTGGG ACCTACATCC GCAAGCTCTG TCACGACATG GGGCTGGCGC TCGGTACCGG CGCGCACATG GGCGACCTCC GCCGAGCGGC GACCGATCCC TTCGACGATG CTGATCTGGT CACGATGCAC GACTTCGTCG ACGCCCTGGC GTGGTGGCGC GAGGACGACG ACCCCGACCC GCTACGGGAG GTGGTCCAGC CCGCCGAACG CGCGCTGGTC GACCTCCCGT CGGTCACGAT TGCCCCGAGC GCGGCGGAAT CCGTGGCGGA GGGCGCACCC ATCTACGCGC CGGGCGTCAT CGACGCCGAC GACGACCTCG ATCCCGCCGC CGAACCGCTC GTCGCCTGCT ACATTCCCAA CGGCGCAGCG GTGTGTCTGG GGACCCTCGC GGGGGACCCG GACGCCGACG AGGGGACCGT TGTCGAACTG GAACGCGTGT TGGTCTAG
|
Protein sequence | MALRGPPEDR SPAELLSFGV LNLDKPPGPS AHQVAAWVRD LATVERAAHA GTLDPKVTGC LPMLLGDATR MAQVFDDSDK EYVAVLELHE RLADPSTLEA VADEFEGEIY QKPPKKSAVV RRLRSREIHR LDVLEAEDRR ALLSIRCESG TYIRKLCHDM GLALGTGAHM GDLRRAATDP FDDADLVTMH DFVDALAWWR EDDDPDPLRE VVQPAERALV DLPSVTIAPS AAESVAEGAP IYAPGVIDAD DDLDPAAEPL VACYIPNGAA VCLGTLAGDP DADEGTVVEL ERVLV
|
| |