Gene Huta_2322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHuta_2322 
Symbol 
ID8384620 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhabdus utahensis DSM 12940 
KingdomArchaea 
Replicon accessionNC_013158 
Strand
Start bp2361397 
End bp2362284 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content70% 
IMG OID644973395 
ProductH/ACA RNA-protein complex component Cbf5p 
Protein accessionYP_003131222 
Protein GI257053389 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.713223 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACTCC GTGGGCCCCC CGAGGACCGA TCGCCGGCCG AACTCCTCTC ATTCGGCGTC 
TTGAATCTCG ACAAACCGCC GGGCCCCTCG GCCCACCAGG TCGCCGCCTG GGTGCGTGAC
CTCGCGACCG TCGAACGGGC GGCCCATGCC GGGACGCTTG ACCCAAAAGT CACCGGCTGT
CTCCCCATGC TGCTGGGCGA CGCCACCCGG ATGGCCCAGG TCTTCGACGA CAGCGACAAG
GAGTACGTCG CCGTCCTCGA GCTCCACGAA CGCCTGGCTG ACCCCTCCAC CCTGGAGGCC
GTCGCCGACG AGTTCGAGGG CGAGATCTAC CAGAAGCCGC CGAAGAAGAG CGCCGTCGTC
CGCCGGCTGC GCTCCCGGGA GATCCACCGC CTGGACGTTC TCGAAGCCGA GGATCGCCGC
GCGCTGCTCT CGATCCGGTG TGAGAGTGGG ACCTACATCC GCAAGCTCTG TCACGACATG
GGGCTGGCGC TCGGTACCGG CGCGCACATG GGCGACCTCC GCCGAGCGGC GACCGATCCC
TTCGACGATG CTGATCTGGT CACGATGCAC GACTTCGTCG ACGCCCTGGC GTGGTGGCGC
GAGGACGACG ACCCCGACCC GCTACGGGAG GTGGTCCAGC CCGCCGAACG CGCGCTGGTC
GACCTCCCGT CGGTCACGAT TGCCCCGAGC GCGGCGGAAT CCGTGGCGGA GGGCGCACCC
ATCTACGCGC CGGGCGTCAT CGACGCCGAC GACGACCTCG ATCCCGCCGC CGAACCGCTC
GTCGCCTGCT ACATTCCCAA CGGCGCAGCG GTGTGTCTGG GGACCCTCGC GGGGGACCCG
GACGCCGACG AGGGGACCGT TGTCGAACTG GAACGCGTGT TGGTCTAG
 
Protein sequence
MALRGPPEDR SPAELLSFGV LNLDKPPGPS AHQVAAWVRD LATVERAAHA GTLDPKVTGC 
LPMLLGDATR MAQVFDDSDK EYVAVLELHE RLADPSTLEA VADEFEGEIY QKPPKKSAVV
RRLRSREIHR LDVLEAEDRR ALLSIRCESG TYIRKLCHDM GLALGTGAHM GDLRRAATDP
FDDADLVTMH DFVDALAWWR EDDDPDPLRE VVQPAERALV DLPSVTIAPS AAESVAEGAP
IYAPGVIDAD DDLDPAAEPL VACYIPNGAA VCLGTLAGDP DADEGTVVEL ERVLV