Gene Huta_2268 details

Gene Information

• Locus tag: Huta_2268
• ID: 8384565
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: +
• Start bp: 2317400
• End bp: 2318053
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 644973340
• Product: Bacterio-opsin activator HTH domain protein
• Protein accession: YP_003131168
• Protein GI: 257053335
• COG category: [R] General function prediction only
• COG ID: [COG3413] Predicted DNA binding protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0657053
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGTCA TCGTCGAGCT CACAATCCCC TCGGAGGCAT TCGAGTTGGG GCAGATCCTC 
CGCGTCGAAG GTGCCACACA GGTCACACTC GAAACGATGG TCCCCCTCGG GGGGAAGCCG 
ACCCCGTTCG TTCGGATCTC CGACGGCGCG CGGCGGTCCT TCGAGAATTC GGTTCGGGAA 
CACGAATCCG TCCGTGATAT TACGCCGGTC AATACACACG ACGAGGAGAC GCTGTACGCA 
CTGGAGTGGG AGCCGCCCGA CGGATCGCTG TTTGATCGAC TTACCGATAT CGGGGCGGCC 
TTGCTCGATG CGACCGGGAC CGCCGATCGA TGGCGGATCG AGCTTCGATT TCCCACTCAC 
GATGCGCTCT CTACGTTTCA GGAGTACTAC ATCGAGGAGG ACATCCCGGT GTCCGTCGAG 
AAGATTTACA ATCCGACGAA ACCTGACGCA GGGCCGTGGT ACGGGCTGAC CCCGGTCCAG 
CGGGAGACAC TTACGCACGC GGTCGAGGCA GGCTACTATT CGCTCCCACG AACTATCTCG 
ACGAAGGAAC TCGCCGCGGA GTTCGACATC TCGGACCAGG CTGCCACCGA ACGGCTCCGC 
CGGGGGATCT CGACGCTCGT CACGAATACG CTGTTGACAC TCGAAGACGA GTGA 

 

Protein sequence

MSVIVELTIP SEAFELGQIL RVEGATQVTL ETMVPLGGKP TPFVRISDGA RRSFENSVRE 
HESVRDITPV NTHDEETLYA LEWEPPDGSL FDRLTDIGAA LLDATGTADR WRIELRFPTH 
DALSTFQEYY IEEDIPVSVE KIYNPTKPDA GPWYGLTPVQ RETLTHAVEA GYYSLPRTIS 
TKELAAEFDI SDQAATERLR RGISTLVTNT LLTLEDE