Gene Huta_2079 details

Gene Information

• Locus tag: Huta_2079
• ID: 8384373
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: +
• Start bp: 2108995
• End bp: 2110995
• Gene Length: 2001 bp
• Protein Length: 666 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644973148
• Product: putative PAS/PAC sensor protein
• Protein accession: YP_003130979
• Protein GI: 257053146
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0273003
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAGCA GGGAGTGCTA CAGCAGCGGC TGGTGCACAA TGAGCGGGAA TGATGCGCCC 
GTAGTGAGTG GGGACGCCAT CCACACGCTG TTAGTCGACG ATAGCGACCG ATGGGCCTCG 
GTCGCTGCGA AGCGAATCGA ACGCGAGACA GACGCGGTCA GTGTCTCGGT CGCGAACGAT 
GCCAACGAGG CGCTCGTACA TCTCGCGGAG GCCGACCGAG TCGACTGTCT GCTCGTGGAC 
TACATGATGC CGGGCATCAC CGGCCTGGAG TTGCTCGAAC GCGTTCGCGA GGATCGTCCC 
GATATTCCGT TCATCCTCAT CACCAGCGAG GGAAACGAGG ACGTGGCTGC CCGGGCGATC 
GACGCCGGTG TGACCGATTA CGTCGTCAAA GAGCCGGCAA CCGATCAAAC CCCACTCCTC 
GCCGAGAAAA TCGAGTCAGT TGTGCGCCAG CATCGCTTAC AATGCCAACT TGAAGAAAGC 
GAACGGCGCT ATCGATCCGT CGTCGAGGAG AGCCGTGACG CGATCTGTCT GCTCGAAGAC 
GGTCGCGTGC AGTTTTGTAA CGAGCACTTT GCCGAACTCA CGGGTAGCGA CTGTGCGTCC 
TGGATCGGCG AGGAGCTCGT CGAAGACGCA ATTCACCCGG ACGACCGGAC CGCAGTGCGT 
GAGGCATTCG CGAACTGGGA CGACGGGAGC GCCGAGCCGG AACTGCAAGA AGCGCGCCTT 
CGTCGTTCCG ACGGATCGGT TCGGGCCTGT GAGTTCACTG GCCGGCGGAT CACCGACGAG 
GGTGAGCCGA CACTGCTCGT CTCGATCCGG GACGTCAGCG AGCGACGACG CCACGAGCGT 
GAGCTACAGT GGGAGCGAGA CCTCAATCGA ACGGTCCAGG AAGCGCTGGT CGAATCGCGG 
ACGCGAGACA CATTGGAAGA AGACGTCGTT ACCCATTTAC ACGAGTACGG GTATCCGGTC 
GCGTGGGTTG CCGAACGGGG GGCCGGTGGA CTGTCCCCGC GAGCCGTCGC CGGGGATCAG 
GCATTCGTCG ACGCCATCTC CTCGACGGCA GAAGCCGACG AGGTGCAGGG CGAACCCGCC 
ACGTGGGCTG CCCAGTCGGG AGAGCCACAG TTCGTCCAAG ATGTCGCTGA GTTGTTTCCC 
TCGGCGTGGC GAGAAGTCGT CACAGACGAC GGGTATCGGT CCGGCGGGGC GGTTCCGCTC 
GAACACAACG ACGTCCCCTA CGGCGTATTG GCGGTCTATC ATGACGAGCC GGACCATTTC 
GGCGAGACCG AGCGCCGGTT GCTCACGGAG CTCGGGGATA CCGTCGCGTT CGGGATCCAC 
AGCCTCGCGA CGGAGAATAG CCTCGCTGCA GACCGGACTG TCACGGCCCG GTTTCGCGTC 
GGCGACGACG CGTACTATCT CGCGGCACTC GCGATAGACG GGGCCTTTCG GGACTGCAAG 
CGGGTCACCG TCCAGGGGAC TGTCCCGGAC GACGAGGACG GGATCGTCCA GTATCTCCGT 
ATCGCAGGCG CGACGGACGC GATCCAGGAC GTGCTGGCTG CTCACCCCGA TGTGACAGCA 
GTCCACGGGA TCGACATTGA GCCACGCAGA CTCCAGGTGA CGGTCAGCGG TCCCAGTCCG 
GAAGCCCATC TCGCGACGCG CGGCGTCGTC GTCGATACCA CGACCCTCGA CCCCAACGGG 
GCCGTCGTCG AGGCACAGCT CCAGTCCCGG GAGACCGTCA CGCCGACACT CGAGCGGTTA 
GAAGCGGCGT TCGACGACGT CTCCATACTC GCGATCGGTA ACGAGGACAC GGTGAGTGAC 
ACCGGCGGCC AGCTGCGAGC GGCCCGACTC ACCGACAAGC AACGCCAGGC TCTCCGCGCG 
GCGTACCATC ACGGGTACTT CGAACAGCCT CGCGGGGCCA CCGCGGCGGA GATCGCCGAG 
ACCCTGGGCG TTGCCCACTC GACGTTCCTC CAGCACCTCC ACCGCGCCCA GCAGAAAGTC 
TTCGAAGCGC GCTTCGAGTG A 

 

Protein sequence

MASRECYSSG WCTMSGNDAP VVSGDAIHTL LVDDSDRWAS VAAKRIERET DAVSVSVAND 
ANEALVHLAE ADRVDCLLVD YMMPGITGLE LLERVREDRP DIPFILITSE GNEDVAARAI 
DAGVTDYVVK EPATDQTPLL AEKIESVVRQ HRLQCQLEES ERRYRSVVEE SRDAICLLED 
GRVQFCNEHF AELTGSDCAS WIGEELVEDA IHPDDRTAVR EAFANWDDGS AEPELQEARL 
RRSDGSVRAC EFTGRRITDE GEPTLLVSIR DVSERRRHER ELQWERDLNR TVQEALVESR 
TRDTLEEDVV THLHEYGYPV AWVAERGAGG LSPRAVAGDQ AFVDAISSTA EADEVQGEPA 
TWAAQSGEPQ FVQDVAELFP SAWREVVTDD GYRSGGAVPL EHNDVPYGVL AVYHDEPDHF 
GETERRLLTE LGDTVAFGIH SLATENSLAA DRTVTARFRV GDDAYYLAAL AIDGAFRDCK 
RVTVQGTVPD DEDGIVQYLR IAGATDAIQD VLAAHPDVTA VHGIDIEPRR LQVTVSGPSP 
EAHLATRGVV VDTTTLDPNG AVVEAQLQSR ETVTPTLERL EAAFDDVSIL AIGNEDTVSD 
TGGQLRAARL TDKQRQALRA AYHHGYFEQP RGATAAEIAE TLGVAHSTFL QHLHRAQQKV 
FEARFE