Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Huta_1871 |
Symbol | |
ID | 8384162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhabdus utahensis DSM 12940 |
Kingdom | Archaea |
Replicon accession | NC_013158 |
Strand | - |
Start bp | 1874413 |
End bp | 1876050 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644972940 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_003130774 |
Protein GI | 257052941 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.176173 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCGCCG ATCGCACGCC GAGCGACGGG GTTGACGTCT GCGTGATCGG GGCAGGACCG GCCGGCGCGC TGATCGCCCA TCGACTGGCC GCCGGTGGCC ACGAAGTGAC CGTTTTGGAG GCTGGCCCGC GATTCGACCC CGAGCAGCGA ATCGAACAGA TGGAGGACGC CCTGCGCCCG GCCCACGGCC GGCCCGATAT CTGGGGGATG GGCGGGGAGC GCGACGCCTT CACGTCGAGT GGCGATCGAC ACTATCCACT CAACCACACC CGCGTGAAAG GGGTCGGCGG GTCGACACTG CACTGGCAGG GGATGGTGAT GCGGCTCCAC GAACGCGACT TCGCGGTCGC GTCGCGGGAC GGTGTCGCCG CCGACTGGCC GATCGCGTAC GACGACCTCC GGCCCTATTA CGCCGAGGCC GAGGCGGCGC TAGGGGTGGC CGGCGCGAGC GACAACCCCT TCGAACCCCC GCGCGAGCAG CCCCATCCGA TGCCGGCGTT CGACCCCTCT CACAGCGACT CGATCTTCGC CGAGGCCTGT GAGGCCCTGG GAATTACCAC TCACTCGGTA CCCAACGCCC GCAATTCCGA GGGCTACGAC GGCCGGTCGG CCTGTGTGGG CTATGGCACC TGCCAGCCCG TCTGTCCCTC CGGCGCGAAG TACGACGCCA CCAGCCACGT CGAGAAGGCC GAGAAAGCGG GCGCGCGAGT GATCGACCGG GTCCCCGTCC AGCGCCTCGA ACACGACGAC GCGGGCGAGC GGGTCACGGC AGCTGTCTAT GCCACGCCCG ATGGCGAGAC GCACCGCCAG GAGGCGCGGG AGTTCGTCCT CGCGGCCGGC GGCGTCGAGA CGCCCCGACT CCTCCTGCTG TCGGAGTCAC CGCAGTACCC CGACGGCCTG GCGAATTCGA GCGGGCTCGT CGGGCGGTAC TTCCACGAGC ACCTGTTTGC GGGCACGAGC GGCGTGATCG ACCGGGAGAC CCGCCAGCAC CACGTCGGGT TCAACACCAC CGAATCCCAC CAGTTCTACG ACGAGCCGGC GGCCGGAACG GACCGGGGAA TCCCTGCGGC TGACGCCGGC GCGGACGATC TCGGGCCGAT CAAACTCGAA TTCCGCAACT ACGGCGGCCC CTCACCCGTT GGAGTTGCAC TGTCCGACGG CGGGTGGGGT GATGGACTAC GGGAGCGGAT CAGTGACACG TATGGCAGCC ACCTCACAGT GGGAGCCCTT GTCGAGCAGA CGCCGCGCAG AGAGAACTAC GTCGGCCTCG ACCCCTCGCG GACCGACGAC CACGGCAATC CCGTCCCGGA GATCCACTGG GGGCTCGACG ATCGCACCCG GCGGACGCTC CGGCGAGCCA ACGCGATCCA GGAAACGATC CTTGCGGAAC TCGACGCGGA GATCACCTGG CAGATCGGCC CCGAGAATAC CGGGCCGGCG TTCCATCACA TGGGCACGAC GCGGATGGGA ACCGATCCGG ACGGGAGCGT CGTCGACGCC CGAGGGCAAA CTCACGACCT CGCGAACCTC TGGCTCGCGG GATCGAGCGT CTTCCCGACC GGCGGCGCGA TGAACCCGAC GCTAACCATC GCCGCGCTCG CGTTGCGGAC TGTCGACCAC CTCGAGAGTG TGCTGTGA
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Protein sequence | MSADRTPSDG VDVCVIGAGP AGALIAHRLA AGGHEVTVLE AGPRFDPEQR IEQMEDALRP AHGRPDIWGM GGERDAFTSS GDRHYPLNHT RVKGVGGSTL HWQGMVMRLH ERDFAVASRD GVAADWPIAY DDLRPYYAEA EAALGVAGAS DNPFEPPREQ PHPMPAFDPS HSDSIFAEAC EALGITTHSV PNARNSEGYD GRSACVGYGT CQPVCPSGAK YDATSHVEKA EKAGARVIDR VPVQRLEHDD AGERVTAAVY ATPDGETHRQ EAREFVLAAG GVETPRLLLL SESPQYPDGL ANSSGLVGRY FHEHLFAGTS GVIDRETRQH HVGFNTTESH QFYDEPAAGT DRGIPAADAG ADDLGPIKLE FRNYGGPSPV GVALSDGGWG DGLRERISDT YGSHLTVGAL VEQTPRRENY VGLDPSRTDD HGNPVPEIHW GLDDRTRRTL RRANAIQETI LAELDAEITW QIGPENTGPA FHHMGTTRMG TDPDGSVVDA RGQTHDLANL WLAGSSVFPT GGAMNPTLTI AALALRTVDH LESVL
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