Gene Huta_1871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHuta_1871 
Symbol 
ID8384162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhabdus utahensis DSM 12940 
KingdomArchaea 
Replicon accessionNC_013158 
Strand
Start bp1874413 
End bp1876050 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content69% 
IMG OID644972940 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_003130774 
Protein GI257052941 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.176173 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGCCG ATCGCACGCC GAGCGACGGG GTTGACGTCT GCGTGATCGG GGCAGGACCG 
GCCGGCGCGC TGATCGCCCA TCGACTGGCC GCCGGTGGCC ACGAAGTGAC CGTTTTGGAG
GCTGGCCCGC GATTCGACCC CGAGCAGCGA ATCGAACAGA TGGAGGACGC CCTGCGCCCG
GCCCACGGCC GGCCCGATAT CTGGGGGATG GGCGGGGAGC GCGACGCCTT CACGTCGAGT
GGCGATCGAC ACTATCCACT CAACCACACC CGCGTGAAAG GGGTCGGCGG GTCGACACTG
CACTGGCAGG GGATGGTGAT GCGGCTCCAC GAACGCGACT TCGCGGTCGC GTCGCGGGAC
GGTGTCGCCG CCGACTGGCC GATCGCGTAC GACGACCTCC GGCCCTATTA CGCCGAGGCC
GAGGCGGCGC TAGGGGTGGC CGGCGCGAGC GACAACCCCT TCGAACCCCC GCGCGAGCAG
CCCCATCCGA TGCCGGCGTT CGACCCCTCT CACAGCGACT CGATCTTCGC CGAGGCCTGT
GAGGCCCTGG GAATTACCAC TCACTCGGTA CCCAACGCCC GCAATTCCGA GGGCTACGAC
GGCCGGTCGG CCTGTGTGGG CTATGGCACC TGCCAGCCCG TCTGTCCCTC CGGCGCGAAG
TACGACGCCA CCAGCCACGT CGAGAAGGCC GAGAAAGCGG GCGCGCGAGT GATCGACCGG
GTCCCCGTCC AGCGCCTCGA ACACGACGAC GCGGGCGAGC GGGTCACGGC AGCTGTCTAT
GCCACGCCCG ATGGCGAGAC GCACCGCCAG GAGGCGCGGG AGTTCGTCCT CGCGGCCGGC
GGCGTCGAGA CGCCCCGACT CCTCCTGCTG TCGGAGTCAC CGCAGTACCC CGACGGCCTG
GCGAATTCGA GCGGGCTCGT CGGGCGGTAC TTCCACGAGC ACCTGTTTGC GGGCACGAGC
GGCGTGATCG ACCGGGAGAC CCGCCAGCAC CACGTCGGGT TCAACACCAC CGAATCCCAC
CAGTTCTACG ACGAGCCGGC GGCCGGAACG GACCGGGGAA TCCCTGCGGC TGACGCCGGC
GCGGACGATC TCGGGCCGAT CAAACTCGAA TTCCGCAACT ACGGCGGCCC CTCACCCGTT
GGAGTTGCAC TGTCCGACGG CGGGTGGGGT GATGGACTAC GGGAGCGGAT CAGTGACACG
TATGGCAGCC ACCTCACAGT GGGAGCCCTT GTCGAGCAGA CGCCGCGCAG AGAGAACTAC
GTCGGCCTCG ACCCCTCGCG GACCGACGAC CACGGCAATC CCGTCCCGGA GATCCACTGG
GGGCTCGACG ATCGCACCCG GCGGACGCTC CGGCGAGCCA ACGCGATCCA GGAAACGATC
CTTGCGGAAC TCGACGCGGA GATCACCTGG CAGATCGGCC CCGAGAATAC CGGGCCGGCG
TTCCATCACA TGGGCACGAC GCGGATGGGA ACCGATCCGG ACGGGAGCGT CGTCGACGCC
CGAGGGCAAA CTCACGACCT CGCGAACCTC TGGCTCGCGG GATCGAGCGT CTTCCCGACC
GGCGGCGCGA TGAACCCGAC GCTAACCATC GCCGCGCTCG CGTTGCGGAC TGTCGACCAC
CTCGAGAGTG TGCTGTGA
 
Protein sequence
MSADRTPSDG VDVCVIGAGP AGALIAHRLA AGGHEVTVLE AGPRFDPEQR IEQMEDALRP 
AHGRPDIWGM GGERDAFTSS GDRHYPLNHT RVKGVGGSTL HWQGMVMRLH ERDFAVASRD
GVAADWPIAY DDLRPYYAEA EAALGVAGAS DNPFEPPREQ PHPMPAFDPS HSDSIFAEAC
EALGITTHSV PNARNSEGYD GRSACVGYGT CQPVCPSGAK YDATSHVEKA EKAGARVIDR
VPVQRLEHDD AGERVTAAVY ATPDGETHRQ EAREFVLAAG GVETPRLLLL SESPQYPDGL
ANSSGLVGRY FHEHLFAGTS GVIDRETRQH HVGFNTTESH QFYDEPAAGT DRGIPAADAG
ADDLGPIKLE FRNYGGPSPV GVALSDGGWG DGLRERISDT YGSHLTVGAL VEQTPRRENY
VGLDPSRTDD HGNPVPEIHW GLDDRTRRTL RRANAIQETI LAELDAEITW QIGPENTGPA
FHHMGTTRMG TDPDGSVVDA RGQTHDLANL WLAGSSVFPT GGAMNPTLTI AALALRTVDH
LESVL