Gene Huta_1688 details

Gene Information

• Locus tag: Huta_1688
• ID: 8383974
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: +
• Start bp: 1677523
• End bp: 1679514
• Gene Length: 1992 bp
• Protein Length: 663 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644972755
• Product: transfer complex protein
• Protein accession: YP_003130594
• Protein GI: 257052761
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3451] Type IV secretory pathway, VirB4 components

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.330287
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCGCG AAAAACTCCC ATTCCCACAA ACTGACGACG AACAGTCAAA CGAGAACGAT 
CACAGTGCCC CTGCCAGCGG CGACGAAGAC AGCGAGACGC GAGAGGTCAC CGTCGAGTAC 
GACCAGTCGC ACGAAGCGGT CGGCACCGTC CCGGAAATCC ACCAGTCGCT GGTCGCACCC 
TCGGCCATCG AGCGGACGCC CGCCGCGATC CGGACCGGCG ACCGGTGGGC GAAGACGCTG 
TGGGCCGGCG AGTATCCCGA CGCGCCGATG GACGGCTTCC TCGAGGAGGT CTACGCCGCG 
GCCGAAACGC GCACCACCGA CGTGAGCATT CACCTCGATC CGCGCGACAC GCAGGCGACG 
CTGGACACGC TCGAAAACCG GATCGAGGAC CTCCAGGCCG ACCTCGAGTA TCTGACCGAG 
AAGCACCGCG CGAGTTCCCG CGGCGTCGAG AAAGACCTCG CCGACCACGA AGAGATGTAC 
GACGTCCTCC GGAACACGCC GATGGAGGCC TTCGACGTCT CGACGTATCT CGCCGTTCGG 
GGCGAGGACC GCGACGACTC CGACGCCAGC GACGTGATCA CGACTGCGCG GCGAGCGCCG 
GCGAATCTGA CGCCAGTCGC ACCGCGCTGG TCACAACTGG ACGCGCTCAC TGCAGCCAGT 
CCGATCGCGA CCGACGAGTT CGACGAGACG CTGGACGCGA CGACGCCCAT GCTCGGCGGC 
GCGGTCGGTG CGATGTTCCC CTTCGTTTCC GGTGCGTTCG CCGAGCCAGG GATCGAATAC 
GGCACCTACG CGCTCAACGA GAGCCCGCTG ATCCTCGATC GCTTCGCACG GGAGACCGGC 
TACTGTACCA TGATTATCGG CCGCCTCGGC GCGGGCAAAT CCTTCGCCAC GAAGTTGCGC 
CTTGTTCGGC GGGCGATGTA CGACGAGGAT ACGATCGTCG TCATGCTCGA CCCGATGCGG 
GGGTTCGCGG GCGTCAGCGA GGCCCTCGGC GGGGAGCAGA TCACCGTCGG CGGGACGCGC 
GGGCTGAACC CGCTGGAGAT CAAGCCGACG CCCGAGCACG TCCTCGACGC GGTGGAGGAC 
CTCGACCCGT GGGGCGAGCA GATTACGTGG GTGATGACCT TCTTCGGGAC GTTCTTCGAG 
CACGTCGCCG ACAATCCGCT CGGCGAGCGC AGCCAGACGC TCCGCCGGGC CACGCAGGCG 
GCCTATCGCC AGCAGGGGAT CACGCGCGAT CCGGCGACCC ACGCGAAAGC GTCGCCGACG 
ATTCGGGACG TGATCGCCGT GCTGGAGGAC TTCGCCGCCG ATCCCGGCGA GTTCGGCTAC 
GAGACCGACG GCGAGCAGCA GGCCGTCCGC AGGGACGCCG AGTCGCTACT GAAGGATCTG 
CGGCCCTCGT TTCGCGATGA GGGGGCGCTG GCCAACCTCG CGAAGCCCAC CGAGTTCGAC 
CTGGATTCGA AGGTCATCTA CCTGGATCTC CACCAGGAGG AGGGCGCGCA GGGGCGTGCG 
GAGACGACGC TGACGATGCA GGTGCTGTTC AACAGCGTCT ACGAGCGCGT CAAGCAGACC 
GAGAAGAAGG TCGTGTTCAC TATCGACGAG GCCCACTACC TGATGAACGA CGCCTCCTCG 
CTGGATTTCC TGGAGACGGC CGTCCGGCAC AGTCGGCACT TCGATCTGAG TCTCGAGTTC 
GTCACGCAGA CCGGCGGCGA GTTCGCGCTC ACGCCGGAGG CCCGGACCAT CGCCAATCTC 
TGTTCGATCA CGCTGCTCCA CCGTGTGAAC GAGGAGGACG ACAAGATCGC ACAGTGGTTC 
GACCTGAACG ATCGGCAGGT GAGTTGGGTC ACCTCGGCGA AAGCTGGCGA GGACGAGGAC 
GGCTACTCCG AGGCGTTGAT CGGGATCGAT CAGGAGGGCT GGTTCCCGCT GCGGATCCGC 
GCGAGCGACT ACGAGGCGAG CGTGATCGAC GGCGGCGGGG ATTTCGACGG AGGTGCCGAC 
GCGGGGACAT GA 

 

Protein sequence

MIREKLPFPQ TDDEQSNEND HSAPASGDED SETREVTVEY DQSHEAVGTV PEIHQSLVAP 
SAIERTPAAI RTGDRWAKTL WAGEYPDAPM DGFLEEVYAA AETRTTDVSI HLDPRDTQAT 
LDTLENRIED LQADLEYLTE KHRASSRGVE KDLADHEEMY DVLRNTPMEA FDVSTYLAVR 
GEDRDDSDAS DVITTARRAP ANLTPVAPRW SQLDALTAAS PIATDEFDET LDATTPMLGG 
AVGAMFPFVS GAFAEPGIEY GTYALNESPL ILDRFARETG YCTMIIGRLG AGKSFATKLR 
LVRRAMYDED TIVVMLDPMR GFAGVSEALG GEQITVGGTR GLNPLEIKPT PEHVLDAVED 
LDPWGEQITW VMTFFGTFFE HVADNPLGER SQTLRRATQA AYRQQGITRD PATHAKASPT 
IRDVIAVLED FAADPGEFGY ETDGEQQAVR RDAESLLKDL RPSFRDEGAL ANLAKPTEFD 
LDSKVIYLDL HQEEGAQGRA ETTLTMQVLF NSVYERVKQT EKKVVFTIDE AHYLMNDASS 
LDFLETAVRH SRHFDLSLEF VTQTGGEFAL TPEARTIANL CSITLLHRVN EEDDKIAQWF 
DLNDRQVSWV TSAKAGEDED GYSEALIGID QEGWFPLRIR ASDYEASVID GGGDFDGGAD 
AGT