| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_1491 |
|---|
| Symbol | |
|---|
| ID | 8383770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | + |
|---|
| Start bp | 1470641 |
|---|
| End bp | 1472227 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644972554 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_003130400 |
|---|
| Protein GI | 257052567 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.580091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATCG TAGTTACGAG TTCCGTCGAG GACGCGGGAC TGGCGGCACT CACCGACGCG
GGCCACGACG TCCGGACCGT CTCGGTCGAC GGGGCTGAGG AACTGGCTGT GGCCGCCGAG
GGAGCGGCTG CGTTGATCGT CGACGAGGAG ACACCGGTAC CTGCCGCGGT GTTCGAGCGT
GCAACGGACG TACAGATCGT CGGCCGAACC GGGATCGACG TCGACGGGAT CGACGTGGCC
ACGGCGACCG AACACGGCGT GATCGTCGCC AACGGCCCGG AGGCAGACGT CCAGGCGGTG
GCCGAATACA TCATCGGGCT GCTGTTCGCC ACGGCGCGAG GGATTCCCCA GGGCCACGTT
CGACTGAAAG ACGGCGAGTG GGCCAAAGGC GACATCATCG GCTCGGAACT CGACGGCAAG
ACCGCCGGAC TTGTCGGCTT CGACAGCGTC GGCCAGGAGG TCGCCAAACG ACTCGACAAC
TTGGGGCTCG ACGTCGTCGT CTACGCACCC GACGGGGATG GCGAGCGGGC CGCACAGATC
GGTGCCGAAC GCGTCGATCT CGACACCTGC CTCGACCGCG CGGACTTCCT CTCGATGCAC
GCGGGAGCCG ATGCGATCCA GTTGGGCGAA CGCGAACTCG ACGCACTCGG GGAAGCCTAC
CTCGTCAACG GAACGGACGG AAATGTCGTC GACGAGTCGG CACTCGCGAA CGCTGCCGAA
GACGGTGATC TTCAGGGAGC AGCCCTCGAC GCCGTGTCGG TCTCGCCGCT GCCGGACGAC
AGCCCACTCC GGGACGTCGA AAACATCCTC GTTACGCCCG AGATCGCCAG CCACACCGCA
ACGAACGGCG AGTCGGCGTC CGCGAGCGTC GCGGCTCAGG TACTCGCCGC ATTCGACGGC
CAGCCGGTCA GCAACGCCGT CAACGTGCCG TCGATTCCAC CCGACGCGTA TCCGGTCGTC
AAACCATATG CTGACCTGAC GGAAACAGTC GCCCGGATCG CGATCCAGCT GTTCGACGGT
GACCTCGAAT CGGTATCCAT CGAATACGCC GGCGACATCG TCACCGAAAC GATCGAGCCC
ATCACGGCCG CCGGGCTCAC TGGCGTGTTC GATCCGCTCG GCTGGGACGC AAACCAGGTC
AACGCGCGGC ACGTCGCCGA CGAGCACGGC ATCGACGTCG ACGTCTCGAC GATCCGAGAA
GCGCCCGACT TCCAGAACCT GGTGACCGTC ACCGTCAGCG GTGGCGGTGA CGAACTCAGC
GTCGAAGGAA CGCAGTTCGC CGACGGCGAG CCCCGCATCG TCAGTATCGA CCGCTACTGG
GTCGAGGCGA TCCCCCACGG CCACATGCTG ATCGTCCGCA ACGCCGACGA GCCGGGCGTG
ATCGGGTTCA TCGGAACCGT GCTTGGCGAA TACGACGTCA ACATCGCCGG CATGTTCAAC
GCCCGGGAAG CCATCGGCGG CGAGGCGCTG TCGGTGTACA ATCTCGACGA CGAACCCGGC
GAGGACGTCC TGGCTGCGCT TAACGACGAC GACCGCATCC TCGAGACCAC CGTCGTCGAA
CTCAACGGAC AGAACGCCCG CGAGTGA
|
|---|
| Protein sequence | MEIVVTSSVE DAGLAALTDA GHDVRTVSVD GAEELAVAAE GAAALIVDEE TPVPAAVFER
ATDVQIVGRT GIDVDGIDVA TATEHGVIVA NGPEADVQAV AEYIIGLLFA TARGIPQGHV
RLKDGEWAKG DIIGSELDGK TAGLVGFDSV GQEVAKRLDN LGLDVVVYAP DGDGERAAQI
GAERVDLDTC LDRADFLSMH AGADAIQLGE RELDALGEAY LVNGTDGNVV DESALANAAE
DGDLQGAALD AVSVSPLPDD SPLRDVENIL VTPEIASHTA TNGESASASV AAQVLAAFDG
QPVSNAVNVP SIPPDAYPVV KPYADLTETV ARIAIQLFDG DLESVSIEYA GDIVTETIEP
ITAAGLTGVF DPLGWDANQV NARHVADEHG IDVDVSTIRE APDFQNLVTV TVSGGGDELS
VEGTQFADGE PRIVSIDRYW VEAIPHGHML IVRNADEPGV IGFIGTVLGE YDVNIAGMFN
AREAIGGEAL SVYNLDDEPG EDVLAALNDD DRILETTVVE LNGQNARE
|
|---|
| |