Gene Huta_1345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHuta_1345 
Symbol 
ID8383622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhabdus utahensis DSM 12940 
KingdomArchaea 
Replicon accessionNC_013158 
Strand+ 
Start bp1316322 
End bp1317005 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content68% 
IMG OID644972406 
ProductBacterio-opsin activator HTH domain protein 
Protein accessionYP_003130254 
Protein GI257052421 
COG category[R] General function prediction only 
COG ID[COG3413] Predicted DNA binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.489776 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGATACC TTCGCGTCAC CGCACGCGTC GACACGATGC AGGCACCGCC GCTGTTCGAC 
CGCCTGGCGA ACACGTCGGC CATCGAGCAG GCGCGCGTCC TCGACTGGAA CTTGACTGCC 
GAAGATGCAA TGCTGCTGTT CGCCGTCGAC GGCGATCCCA CCCCACTCAC CGGGTCGGAG 
GGCGAATTCG CCGGGGTCGA CCGCGTCGAA CTGGCAGGCG ACGGCCAGCG GGGTGGCGAA 
AGCGGCGTCC GCATGCTCGC GCACGTCCAG CGGTCGGCAG TCCCGATATT CAGTTGTCTC 
GCGAGCGCGC TTGAGGCCGG TGGGTTGATC GTCCAGACAC CCGTCGTCTT CGCCGACGGG 
GAGGTCCACG CCAGGATCGT CGGCGATCCC GGCCCGCTCC AGACGGCGTT CGAGCGACAG 
GGTGACGGGA TCGACGTGCG GATCGACGAG ATCACCTCGA CTCCGGCAGT GAATAGGGCG 
TCGAACGGCG GGCTGAGCGA ACGCCAGCGG GAGGCGATCG TCGCGGCGAA AGAGCTGGGA 
TATTACGAGA AACCGCGGGG CGCAACGCAG GCGGACGTGG CGGCGGCACT AGAGTGTTCG 
CCCCAGACCG CGGGAGACCA CCTCCGGAAA GCCGAAGCGA AGTTGGTGGA CGCCGCGCTC 
GACGAGGTCG AATCCAGCGT CTGA
 
Protein sequence
MRYLRVTARV DTMQAPPLFD RLANTSAIEQ ARVLDWNLTA EDAMLLFAVD GDPTPLTGSE 
GEFAGVDRVE LAGDGQRGGE SGVRMLAHVQ RSAVPIFSCL ASALEAGGLI VQTPVVFADG 
EVHARIVGDP GPLQTAFERQ GDGIDVRIDE ITSTPAVNRA SNGGLSERQR EAIVAAKELG 
YYEKPRGATQ ADVAAALECS PQTAGDHLRK AEAKLVDAAL DEVESSV