Gene Huta_1338 details

Gene Information

• Locus tag: Huta_1338
• ID: 8383615
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: +
• Start bp: 1309115
• End bp: 1309771
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644972399
• Product: Bacterio-opsin activator HTH domain protein
• Protein accession: YP_003130247
• Protein GI: 257052414
• COG category: [R] General function prediction only
• COG ID: [COG3413] Predicted DNA binding protein

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.99339
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTACATG CGACGCTGAC GCTATCGATC CCCCGGCGGA TCTGGATCGG CGCGCTCTCG 
CAGGATCATC CCGAGTCGTG TATTCGCGTC CTCTCGGCGT TCCCGAAGGG CGAGGAATCG 
GGCGTTGGAC TGGTCGAAGT CGACGGCCCG GACGTGCCGG CGGTCGTCCG CGCCATCGAC 
GAGGAGGAGA CCGTCACCGA TCTGGCGGTG CTGGGTCGCC ACGAAGACAC TGCTCTGGTG 
CAATTCGAGA CCACCGATCC ACTCCTCCTC TTCCCGATCA TCGGCTCCGG GATCCCGCTG 
GAACTCCCCT TCGACATCCG CGATGGGGAG GCGCGCTGGG AACTCACGGC CTCCCAGGAC 
CGCCTCTCGG AACTCGGCGA GCAACTGGAA ACGCTTGGCA TCTCCTTCAC TGTCGAGCAG 
CTCCGCCAGC ACGTCGAACC CGAGCAGGTG CTGACCGATC GCCAGACGAC GCTGGTGACG 
GCGGCGATCG AGCGCGGGTA CTACGACACC CCACGGGAGT GTACACTGAC CGAACTCGCC 
GACGCACAGG ACATGGCCAA ATCGACCTGT AGCGAGACGC TCCACCGCGC CGAGGAGAAG 
ATCGTCAAGG GCTTCTTCGA GGACGAACCG ACCGCGAGCG CCCGGCGAAG GATCTAA 

 

Protein sequence

MVHATLTLSI PRRIWIGALS QDHPESCIRV LSAFPKGEES GVGLVEVDGP DVPAVVRAID 
EEETVTDLAV LGRHEDTALV QFETTDPLLL FPIIGSGIPL ELPFDIRDGE ARWELTASQD 
RLSELGEQLE TLGISFTVEQ LRQHVEPEQV LTDRQTTLVT AAIERGYYDT PRECTLTELA 
DAQDMAKSTC SETLHRAEEK IVKGFFEDEP TASARRRI