Gene Huta_1318 details

Gene Information

• Locus tag: Huta_1318
• ID: 8383595
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: -
• Start bp: 1290999
• End bp: 1292885
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644972379
• Product: TrkA-N domain protein
• Protein accession: YP_003130227
• Protein GI: 257052394
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGCAG GCGGCGCGGA CGTGATCGTC CTGCTGGTCG CGATGATCTT CGCGCTCGGC 
GTCGGCGCAC AACTGCTGGC GGCGCGCTTG CGCCTCCCGA GCATCATCTT CTACATCGCG 
GCCGGACTGG CGATCGGACC GCTGTCCGGG TTCGTCCTCC CGTCACGGTT GTTCTCGCTG 
GAAACCTTCG GTGCCGGGCC ACTCTCGGCG ATCGTCGGCC TCTCGGTGGC GATCATCGTC 
TTCGAGGGGG CCTTCCATCT CCATCTGGAC CGGTTGCGCG AAGCGCCGGC GGCGACGTTC 
AGGCTGGTCA CCCTTGGTGC GGGTATCGCG CTTGTCGGGA CGGCTGTCGC CGTCAAACTT 
GCTTTCGGAA CCGCCACCTG GGGGTTGTCG TTTTTGATCG GTGCGTTGCT CGTGGCAACG 
GGGCCGACCG TCATCGCTCC CATCCTGCAG GTCGTGCCAG TTCGGGACCG CGTCGCTGCC 
GCACTGGAAA CCGAGGGGAT CGTCAACGAC GTGACGGCGG CGATCACCGC GGTCGTGGTC 
TTCGAGGTTG TCGTTCTCAG CGGTAACCCG CCCGTCGAAC TGCTCAGTGC GTTCGCCGAA 
CGCCTCGGCC AGGGCGTTCT GGTCGGGGTG ATCGTCGCCG GCGTTGTCTA CTACCTGTTG 
CGGTACATCG ACCTCTCGCC GGGCGATGCC CCGCGGAACG CCCGACTGCT GGTGCTCGCC 
GGCGCGATCG TCTCGTATGC CGGCGCGAAC TATCTCTCGG GTGAGGCCGG CGTCGCCGCT 
GCTGCGACGG CGGGGATCGT CCTGGGCAAC CTTGACATCC CCTACGAGGA GGATATCACC 
GCCTTCAAGG GTGACGTGAC GTTGCTCGTG CTATCCTTTG TGTTCATCAC GCTGGCGGCG 
ATCCTCGAAC TGGAGGTCCT GTTTGATGTC CTGGTGCCCG GATTGATCGT CGCGGTCGCG 
GTCGCGGCGG TGATCCGACC CCTCTTGATG TACGTCTCGA CGGTCGGTGG CCGATTCACC 
TTCGGCGAAC GGGCGTTCAT GAGCTTCGTC GGCCCGCGTG GGATCATCCC GGCGTCCGTC 
GCGACGCTGT TCGCCATCGA ACTGCAGTCA CAGGGCATGG CCGCCGAGGC CAACGTTCTG 
ATCGGTACCG TCTTCCTGGT TATCCTTGCC ACGGCCGTCG TCGAGGGCGG CCTGGCGAGA 
TACGTGGCAC AATACTTCGA CGTGATACCA ATGCGAGTCA TCATCGTGGG CGGCGGCCGC 
GTCGGCCGTG CGCTCGCCGA CCGGTTAGAG GATCGTGGAG AGAACGTCGT CATCATCGAG 
GACGACGAAA CACAGGTCGA GGAAATCCGA AACGACGGGT TCACCGCAAT TATCGGCGAC 
GGAACGGATA CTGACGTGTT ACGGGAATCC GGGGCGAACA ACGCCAAGAC AGTGGTCGCC 
GCGACAGGCG ACGACGACAC CAACCTGCTC GTCGCCCAGC TTGCAAGCAC GAACTTCGAG 
ATCGAGGACG TCATCGCTCG GGCGAACAAC CCCGACAATG TCGAGGCGTT CGAGGATCTG 
GGTGTCCGGA CGATTTCCTC GTCGATGGCG GTCGCGTGGG CGATCGACAA CCAGATCGAG 
CGCCCGGCGA TCGCCCACTG GATGACGGAC ATCGACCGCG TCGGTGACGT TCAGGAAGTG 
GAAGTGACCA GCGAGAACTT GATCGGTCGG TCCCTCCGCG AGATCGGTCC GGAACTTCCC 
GATTCCTGTC TGATCGCACT CGTCAACCGT GACGGCGAGA CGATCGTTCC GAACGCGGAG 
TTTACGATCC AGGCAGGCGA CAAGGTGACG CTGCTGGGCG AGAGCGATGC CGTCCGCGAG 
GGCATGGCAT TCTGTCACCA GTCATAG 

 

Protein sequence

MSAGGADVIV LLVAMIFALG VGAQLLAARL RLPSIIFYIA AGLAIGPLSG FVLPSRLFSL 
ETFGAGPLSA IVGLSVAIIV FEGAFHLHLD RLREAPAATF RLVTLGAGIA LVGTAVAVKL 
AFGTATWGLS FLIGALLVAT GPTVIAPILQ VVPVRDRVAA ALETEGIVND VTAAITAVVV 
FEVVVLSGNP PVELLSAFAE RLGQGVLVGV IVAGVVYYLL RYIDLSPGDA PRNARLLVLA 
GAIVSYAGAN YLSGEAGVAA AATAGIVLGN LDIPYEEDIT AFKGDVTLLV LSFVFITLAA 
ILELEVLFDV LVPGLIVAVA VAAVIRPLLM YVSTVGGRFT FGERAFMSFV GPRGIIPASV 
ATLFAIELQS QGMAAEANVL IGTVFLVILA TAVVEGGLAR YVAQYFDVIP MRVIIVGGGR 
VGRALADRLE DRGENVVIIE DDETQVEEIR NDGFTAIIGD GTDTDVLRES GANNAKTVVA 
ATGDDDTNLL VAQLASTNFE IEDVIARANN PDNVEAFEDL GVRTISSSMA VAWAIDNQIE 
RPAIAHWMTD IDRVGDVQEV EVTSENLIGR SLREIGPELP DSCLIALVNR DGETIVPNAE 
FTIQAGDKVT LLGESDAVRE GMAFCHQS