| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_1246 |
|---|
| Symbol | |
|---|
| ID | 8383521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 1219504 |
|---|
| End bp | 1220544 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644972305 |
|---|
| Product | Radical SAM domain protein |
|---|
| Protein accession | YP_003130155 |
|---|
| Protein GI | 257052322 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2108] Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCAG AGGGCTGCGA GCAGTGTGCC AAGGGCGGCA AGATGGTGAT CTTTGTCTAC
GGCTACTGCG ACCAGCGCGA CTGTTTTTAC TGTCCGCTCG GCGAGAACCG CAAGAACGTC
ACCGATGTCT ACGCCAACGA GCGGAAAGTC GAGGACGACC AGGACCTCAT CGAGGAAGCA
AAGCGCATGG ACGCGCTGGG ATCGTCACTG ACCGGCGGCG AACCCCAGGA AGTCATGGAC
CGCACCTGCC GATATATCTC CCTGCTCAAA GACGAGTTCG GCGAGGACCA CCACATCCAC
CTATATACCG GCATCACCGG GGGGCGCGAG AACATGCGCC GCCTCGCCGA GGCCGGTCTG
GACGAAATTC GGTTCCACCC GCCCCTGGAC ATGTGGGGTG ACCTCCACGG CACCGAGTGG
GAAGACATCC TCTACATCGC CCGTGAGGAA GGGCTCACGC CGGCTTTCGA GATTCCCGGC
ATTCGGCCGG AGGACGAGTT CATCACCTTC GTCGAGGAGG GGGCCGCCGA ATTCGTCAAC
GTCAACGAGT TCGAGATGAG CCAGGGCAAC TACCGGCGGA TGCAACAGAA AGGGTTCGAT
CTGAAAGAGG ACCACATGAG TGCTGTCGAG GGCAGCCACG ACGTGCTCGA CTCGATGGCC
AAACACCCGA AGGTCTACTT CTGTACGTCG GTGTTCAAAG ACGCTGCCCA ACATCGCAAT
CGCCTCAAGC GGATGGCCAA GAACGTCCGC CGTCCCTTCG ACGAAACCAC GGACGACGGC
ACACTCGTCT ACGGCAAGGC CTGGGTCGAC GCCGACCGCC TCGACGAACT CGGTGTTCCC
GCGGAGTACT ACGTCGAAAA ATCCGAGCAC GTCGAGGTGG CGTGGTGGCT CTTAGAGGAG
ATGATCGCGG AGGGCGATAT CGCGGAGGGC GAAATCGTCG AGCAGTATCC CACGGTGGAC
GGGACGGTGG TCGAACGAAC GCCGCTTCCT GACGGATCGA TCGAGGGGAC TGAGTCGGCT
CAGTCTGTGC GAGCCGAGTA A
|
|---|
| Protein sequence | MISEGCEQCA KGGKMVIFVY GYCDQRDCFY CPLGENRKNV TDVYANERKV EDDQDLIEEA
KRMDALGSSL TGGEPQEVMD RTCRYISLLK DEFGEDHHIH LYTGITGGRE NMRRLAEAGL
DEIRFHPPLD MWGDLHGTEW EDILYIAREE GLTPAFEIPG IRPEDEFITF VEEGAAEFVN
VNEFEMSQGN YRRMQQKGFD LKEDHMSAVE GSHDVLDSMA KHPKVYFCTS VFKDAAQHRN
RLKRMAKNVR RPFDETTDDG TLVYGKAWVD ADRLDELGVP AEYYVEKSEH VEVAWWLLEE
MIAEGDIAEG EIVEQYPTVD GTVVERTPLP DGSIEGTESA QSVRAE
|
|---|
| |