| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_1179 |
|---|
| Symbol | |
|---|
| ID | 8383454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 1153464 |
|---|
| End bp | 1155137 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644972238 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003130088 |
|---|
| Protein GI | 257052255 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1405] Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.608972 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCA ACGAAACCTA CGAAAACCGG CTCTACGATG TGGCAGAGAA GTTACAGATA
CCCGATAGTA CCCTGCAGAT CACCCGCGTC CGTCTCGACC ATCTCCACGG GGAGGCGGAC
GTCGACGCGG CACAGTTCAA CCAGATTGCG CCGGCAGTAC TCGCACTCTC CTGTCGGGAA
GATGGTCTCC CGATCACCGG TCGGGACATC GTCGAACCGT GGACTGATCT GCTTGCGGAT
CCGGAGGCGA CCGAACTCGA TCCCGAACGC CTCCCCGAAC AGATCGAGGC GGTCGCCGAC
CGGCTCGACA TCGACCACCC CCCGGAGCGC CCCGACACGC TGGTCGAGCG CTACGCCGAC
ACGCTTGATC TGTCCGAAGC AGTCGGCACG GCCGGCAAGC GAATCCTCAC AGACGTCTTC
CGGGAGGCCC CCCGCGTCGT CGCCGAGGCG TCCTCCCCGG CGGAGACGGC CGGCGCGTCA
CTCGTCCTCG CGGCGGAGGC CAACGGCGTC GACGGCGTCG GACCCAACGA GGTTGCGGAT
GTCGGCGCGG CCGGCGGCGT CACGATCAAG AACCGGTACA AAGCCTTCCG GGAAGTGCTG
GACGAGGGGG GCCTGGACGC CCGACGCTAT CAGGCGGACG CCGTCGAGGA CGGAGCGTCC
GCGGACACCG GGCGACCGGA CGCGAAATCC TCCGCCTCGG ACGGCGGGGT TTCGGACGTC
CCGGCCGACG CGTGTATGGA TGCCGTCCGC GGGATGTTCC CGGACGAACT CCCGACCACG
GCGACGGTCG CCGAGGCGCT GGATGCACCC GAGGAGCGTG TCGGTGATCG ACTGCAGGAC
CTCGCCGATC GCGGCGAACT CGCGGCCAGG CGCGCCGGCG AGACCGTCGC CTGGATTCCG
GGTGATCGGG ACGAACTCGG TGCGGACCTG ACGATCGACG CCGTCCACAG CGAGGTCGAC
GCACTGGTCG AGGCACTCGA CGTCGACGCG TCCGTGCGAT TGTTTGCCCG GGGCCTGGTC
AGTGACGCCG CCGAGAGCGT CGCTGTCGAG GACGCCGCCG AATTCGCGGG TGCGGCACTG
ATCGCCAGCA GCCGACTCAA CGATGGCGAT CTCGATCCGG CGACGGTCGC AGCGGAACGC
GACTTCGGGA CGCGGGCGCT CTACCAGTGG CTCGACCGCC TCGGGGAGAT CGCCGCCGTC
GACATCCCGC GGCGCGGGCC GTCGGACGTC GTCGAGTCAC TGGCCGAGGA TATCGAGTTT
TCCGAGACGG TTCTCGAGGA CAGTCGCCGC ACGCTGGAAC ACTACGAACC GGCGGCGGAC
GACGCGGCGT TCGCCGCGCC GGAACTGGCC GCCGGGGCCG TCTTCTTCGC GGCGACGACC
GGCGGCGAAC CGATCGACGT CGACGAACTC GCTGACAGCA TCGGCTTCGA GGCGAGTCAC
GTCACGGACG CGATGAACAG CGTCTTCGTC TCACTGTGCC GGGGCCTGAT CCGCGGCGAG
ATCGACTACG AGGAGTCGTT CTGGACGGCC GACCTGCTCG AGTCCGACCG AATCGCCGAG
ATCGGTGACC CCCAGACCGG GCGGGCCGTC GCCGCCGCAA AAACCTACGT CGCCGGTCGG
GAAGGCCAAC ACGTCGACGA AGGGACGCTT GACGTGTTGC TCGACGAGAA CTGA
|
|---|
| Protein sequence | MASNETYENR LYDVAEKLQI PDSTLQITRV RLDHLHGEAD VDAAQFNQIA PAVLALSCRE
DGLPITGRDI VEPWTDLLAD PEATELDPER LPEQIEAVAD RLDIDHPPER PDTLVERYAD
TLDLSEAVGT AGKRILTDVF REAPRVVAEA SSPAETAGAS LVLAAEANGV DGVGPNEVAD
VGAAGGVTIK NRYKAFREVL DEGGLDARRY QADAVEDGAS ADTGRPDAKS SASDGGVSDV
PADACMDAVR GMFPDELPTT ATVAEALDAP EERVGDRLQD LADRGELAAR RAGETVAWIP
GDRDELGADL TIDAVHSEVD ALVEALDVDA SVRLFARGLV SDAAESVAVE DAAEFAGAAL
IASSRLNDGD LDPATVAAER DFGTRALYQW LDRLGEIAAV DIPRRGPSDV VESLAEDIEF
SETVLEDSRR TLEHYEPAAD DAAFAAPELA AGAVFFAATT GGEPIDVDEL ADSIGFEASH
VTDAMNSVFV SLCRGLIRGE IDYEESFWTA DLLESDRIAE IGDPQTGRAV AAAKTYVAGR
EGQHVDEGTL DVLLDEN
|
|---|
| |