| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_1112 |
|---|
| Symbol | |
|---|
| ID | 8383387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 1085937 |
|---|
| End bp | 1086923 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644972174 |
|---|
| Product | Endo-1,4-beta-xylanase |
|---|
| Protein accession | YP_003130024 |
|---|
| Protein GI | 257052191 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3693] Beta-1,4-xylanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGTG ACAAGACACT CCGCGAACTG GCCGACAAGA ACGACCTCAC GCTCGGTGCA
AGCATCACGG CAGACGCATT CAGGACGTAC CCCGACGATC CGGCGGTCGC ACAGACGCTC
ACGCGGGAGT TCAACGCCGT CACCACTGGC AACGCACTCA AGATGGGGCC GCTGCGCCCT
GAGCGCTACA CCTACAATTT CGAGGATGCC GACGCCATCG TGAACCTCGG GGTCAAAAAC
GACCTGCTGG TTCGGGGCCA CGCGCTCGTC TGGCACAACC AGACCCCTGG GTGGTTCTAC
CCCTGGGAGT ACACCGACGA CCAGCTCCGG GAGTTCCTCC GGGACCACAT CCACACCGTC
GCGGGTCGCT ATCGCGGGAA AGTCGACGTC TGGGACGTCG TCAACGAGGC CGTCGCCGAC
GACGGTACCA TGCGCGAGAC GGCGTGGTAC GACGCGATGG GCGAGGAGTA CATCGACCTG
GCCTTCCAGT GGGCTAACGA GGTCGCCCCG GAGGCTGACC TCTTCTACAA CGACTACGGC
ATCGACGAGA TCAACGAGAA GGCCGACGGG GTCTACGCAC TCCTCGAACG CCTCCTCGAC
CGCGGTGTCC CCATCGACGG CGTCGGCCTC CAGATGCACG CCTTTCGCGC CCAGGAGTAC
GTGACGCCCG AGGCCCTCGG CGAGAACATC CGGCGGTTCA AAGACCTCGG GCTGGACGTC
CACGTCACCG AGATGGACGT CGCCTACGAC CGGGAGAACG TCCCCGAGGA CCACCTGGAA
CACCAGGCCC AGTACTACCG CGACATCCTC GAGGCGTGTC TCGACAACGG CTGTGACACG
CTGGTCACCT GGGGGGTCCA CGACACGGCC TCCTGGCTGC GAAACTACGA CCAGACGATC
ACCGACGACC CGCTGCTGTT CGACGAGGAC TTCGATCCCA AGCCCGCCTA CTTCGCGATC
AAGGACCTGC TGGCGAATCG GGACTGA
|
|---|
| Protein sequence | MSSDKTLREL ADKNDLTLGA SITADAFRTY PDDPAVAQTL TREFNAVTTG NALKMGPLRP
ERYTYNFEDA DAIVNLGVKN DLLVRGHALV WHNQTPGWFY PWEYTDDQLR EFLRDHIHTV
AGRYRGKVDV WDVVNEAVAD DGTMRETAWY DAMGEEYIDL AFQWANEVAP EADLFYNDYG
IDEINEKADG VYALLERLLD RGVPIDGVGL QMHAFRAQEY VTPEALGENI RRFKDLGLDV
HVTEMDVAYD RENVPEDHLE HQAQYYRDIL EACLDNGCDT LVTWGVHDTA SWLRNYDQTI
TDDPLLFDED FDPKPAYFAI KDLLANRD
|
|---|
| |