Gene Huta_1052 details

Gene Information

• Locus tag: Huta_1052
• ID: 8383326
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: +
• Start bp: 1018643
• End bp: 1020667
• Gene Length: 2025 bp
• Protein Length: 674 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644972117
• Product: alpha amylase catalytic region
• Protein accession: YP_003129968
• Protein GI: 257052135
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATCACC CCGGCCCACC CCACTTCGTC GCCGTCGGCG AAGCAATCGA ACTCGCCCCC 
CGCGATCCGG ACCCGGAAGC GACCTACGCG TGGGACGTGA CCGCCCGACC GGACGGATCG 
ACAGCGACCG TCGGCGACGA CCCCGTCGAG CATCTCGAAC CCGACGTCGC GGGAACCTAC 
GTCGTTCACC TCGCGGCCCC CGACGGCGGC CACGACCTCA CCGTTCGCGC GTTCGCGTCG 
GAACTGACCC CCTCGACGGG CGGCGTCTCC GGGGCATCGG GCGTTTCGGC GGGCGAGAGT 
GGATTCGAGA GCGGGGGATC CGGATCGGGC GGTCGATCGG GCAGTGCTCG CGCCGACGCC 
GTAACCGGTG ACGGGGGCCG ACCCCGGCTC ACCCTCGAAC CCGCGATCGA GGGGGACGAA 
GCCGTCGTCC GGGCCGATCC GCTCCCGCAT CCCGACGGAC CGGAGACGTC GGCCGACCTG 
GCCGTCGAAT TTCTGCTCGA CGACCGGGAC AATGTCGACC GCGAGGCGGT GACCATCGAT 
GAGACCGAGC TCCGGGTTCC GCTCTCGGCG ATCGACGACA GACTACGGGT GCACGCCGTC 
TCGGTCGGGG ATCGAGGCTA CAGCGTCCCG GACGCCGTCG AGTTCGCGCG GGAGGACCCG 
ACCGGGTCGG CAGTCACGGA TGGGAGCGTG ACTGCCAGTC ACATCTACGA GCCACCCGCG 
TGGGCCGAGG ACACGATCAT CTACGAGATC TACGTCCGGA CCTTCGCGGG CCAGGCAGGT 
GATCAGCGGA GCGGTGGCGA TGGAGCGGCT GCGGGCGAGG GGGAAACCGA GCGCTCGGCC 
TTCGACGCGA TCGTCGACCG GCTGGACTAC ATCGAGTCCC TCGGAGTGGA TACCCTCTGG 
CTGACGCCGG TCCTGGAGAA CGACCACGCG CCCCACGGGT ACAACATCAC GGACTTCTTC 
TCGATCGCCG AGGATCTTGG GTCACGGGCC GATTACGAGC GCCTCATCGC GGCCGCCCAC 
GACCGCGGGA TGAACGTCCT GTTCGACCTC GTGTGCAATC ACTCCGCGCG AACCCATCCG 
CACTTCCAGG CGGCCGTCGC CGATCCGGAC AGCGAGTACC ACGAGTGGTA CGAGTGGCGC 
GGCCCCGGCG AGCCCGAGAC GTACTTCGAG TGGGAGCACA TCGCGAACTT CGACTTCACG 
CACCTGCCGG TCCGGCGACA CCTCCTCGAC GCGATCGATC AGTGGGCCCC ACTGGTCGAC 
GGCTTCCGGA TCGACATGGC GTGGGCCGTG CCGAACAACT TCTGGCGGGA GGTCCACGAC 
CGGGCGAAAG CCATCGACAG CGAGTTCCTG CTACTCGACG AGACGATCCC GTACATTCCG 
GACTTCCAGG GCGGGTGTTT CGACATGCAC TTCGACTCGA CCACGTACGC GGCGCTGCGT 
CGGGTGGGCA ACGGCGCGCC GGCCGCGGAA GTGCTCGATG CTGTCGACGA ACGCGCAGCG 
ATCGGCTTTC CGCCACATGC CGGGTTCATG CTGTACGCGG AGAACCACGA CGAGACGCGC 
TATCTTGTCG AATGTGGTCG TGCGGCCGCC CGTGCCGCCA CGGGCGCGCT GTTCACGCTG 
CCGGGGTCCC CACTGGTGTA CGCCGGCCAG GAGTTCGGCC AGCGCGGCAA GCGCGACGAC 
CTCGCGTGGG AACACGCCGA CGAGGACCTC CAGGCGCACG TCCGACAGCT CGCGGCGGCG 
CGTCGCGACG TGACGGCGCT GGAATCGGCC GCGACACTCC ATCGCATCGA GTGGACCGTT 
CAGTCGGGTG CGGCCGACCG TGTCGTCGCG TTCGGACGCG TTCGTGGCGA CGATGCCGTC 
GTCGTCGTCC TGAACTTCGG GCCGGAGACG GCGACAGTCG AACTACCGAT AGCGACCGGG 
ACGACCGACG CAGTGTCCGG GAAGGCTGTC GGAACTGGCG AGGGGGGACT GCGGGTCGAC 
AACGTTCTCG TCGTGCCGGC CGAGTCGGAG ACGATCAAGG GGTAG 

 

Protein sequence

MHHPGPPHFV AVGEAIELAP RDPDPEATYA WDVTARPDGS TATVGDDPVE HLEPDVAGTY 
VVHLAAPDGG HDLTVRAFAS ELTPSTGGVS GASGVSAGES GFESGGSGSG GRSGSARADA 
VTGDGGRPRL TLEPAIEGDE AVVRADPLPH PDGPETSADL AVEFLLDDRD NVDREAVTID 
ETELRVPLSA IDDRLRVHAV SVGDRGYSVP DAVEFAREDP TGSAVTDGSV TASHIYEPPA 
WAEDTIIYEI YVRTFAGQAG DQRSGGDGAA AGEGETERSA FDAIVDRLDY IESLGVDTLW 
LTPVLENDHA PHGYNITDFF SIAEDLGSRA DYERLIAAAH DRGMNVLFDL VCNHSARTHP 
HFQAAVADPD SEYHEWYEWR GPGEPETYFE WEHIANFDFT HLPVRRHLLD AIDQWAPLVD 
GFRIDMAWAV PNNFWREVHD RAKAIDSEFL LLDETIPYIP DFQGGCFDMH FDSTTYAALR 
RVGNGAPAAE VLDAVDERAA IGFPPHAGFM LYAENHDETR YLVECGRAAA RAATGALFTL 
PGSPLVYAGQ EFGQRGKRDD LAWEHADEDL QAHVRQLAAA RRDVTALESA ATLHRIEWTV 
QSGAADRVVA FGRVRGDDAV VVVLNFGPET ATVELPIATG TTDAVSGKAV GTGEGGLRVD 
NVLVVPAESE TIKG