Gene Huta_0960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHuta_0960 
Symbol 
ID8383233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhabdus utahensis DSM 12940 
KingdomArchaea 
Replicon accessionNC_013158 
Strand
Start bp924508 
End bp926181 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content62% 
IMG OID644972024 
Producttype II secretion system protein E 
Protein accessionYP_003129876 
Protein GI257052043 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGATC ACGGCAGACC CAAACCGTCG GACGAACTCC GCCAACACGC AGCGAGGCGT 
CCACACCTCC GTGATCACCT CCAGAAGTTC AAGCAGATCA CCGGCGAGTT CCCGATGTTC
GTCGAGGAAG CCGACGGCGA ATACGAGACC AATCGCCCGA ACATCCTCTA CCCCGTCGGC
GGCCCTATTT ACACGCACGT CTACGGCGAC ATCGGCCAGG ACATCAAGTA CTACGCGATC
GAGCCGGAAC TGGCAGAGGA CGAGCAGACG GTCTTCGAGA AGGTCCGCAA CCGGTTGCTC
GAACGCAGCG TCATGAAGCC CGCACCGACC GAGGAAGGTG AGTACGACGA CCGGATCGAA
GAACTCCTTC AAGAGACGAC GAACGTCAAG CGGCGTGAAA GCGGTGACGG CGTCCTGAGT
CGACTGGGGA ACATTACGAA CCTCGGGAAA GTTGACGTCA CCGAGGAGAC CTACGAAAAC
ATCCGCTACC GGCTGAACCG CGACATCGTC GGCCTCGGTC CCCTCGAGCC GGTGATGCGG
GACCCGGCCA ACGAGGACAT CCACGTCATC GGTCCCCACG AGTGTTACGT CGATCACTCC
GTCTACAGCC TCATCAAGAC GACCGTCGAC TTCGGCGAAC CCGCGGATTA CGAGCAGTGG
CTGCGAAACA TGGGCGAACG GATCGGCGAC CCCGTCTCCG ACAGCGACCC GATCATCGAC
TCGACGCTGC CGGACGGCTC GCGTATCAAC ATCATCTACT CCGACGATGT CTCGTTGAAG
GGGCCCTCGA TGACCATCCG ACAGGGCACG GAGGTGCCCC TGTCGATCTT CCAGATTACG
AAGTGGGGCA CCCTCTCCCC GGAACTGGCG GCCTACCTCT GGCTCGCCCT GGAGAACGAA
CAGACGGTGT TCGTCGTCGG GGAGACCGCC TCCGGGAAGA CGACGACGCT GAACTCCATC
ATGTCGTTCA TCCCCCGGGA TTCGAAGATC TACACCGCCG AGGACACCTC CGAGGTCCTG
CCGCCACACG ACACCTGGCA GCAACTCCTC ACCCGGGAAG GTGACGACGA GGGGACGGAC
GTCGACATGT TCGACCTCGT CGCCGCCGCG CTCCGGTCGC GGCCCGACTA CATCATCGTG
GGCGAGGTTC GTGGCGAGGA GGGTCGAATG GCGTTCCAGG CGGCCCAAAC CGGCCACCCG
GTCATGCTGA CCTTCCACGC TGCCGACATC GTTTCGATGA TCCAGCGCTT CACCGGCGAA
CCGATCAACG TCCCCGAGAC GTTCATGGAC GTCGCCGACA TCGCGCTGTT CCAGAACCGG
GTCAAGCAGG GCGACGACGT CCTCCGCCGG GTCACCTCAG TCCAGGAAAT CGAAGGCTAC
TCCAAGGAGA TGGACGGTGT CGTCACCCGC CAGAGCTTCT ACTGGGACCC CGTCGAGGAC
GAGATCGTCT TCCAGGGGAT GAACAACTCC TTCGTCCTCG AAGAGCAGAT CGCGACCCTG
CTAGGGTACG AGGACACCCG CGACATCTAC GACGACCTCC AGTTCCGGGC GGATATCATC
AGGCGGGCGA TCCAGGAGAA CGTGCTGGGC TACCACGAGG TCAACGAGTT GATCGAGAAC
TTCCAGCGCG ACGGCGTCGA GGGACTCCCC TTCGACATCC ACCGCCAAGA CTGA
 
Protein sequence
MTDHGRPKPS DELRQHAARR PHLRDHLQKF KQITGEFPMF VEEADGEYET NRPNILYPVG 
GPIYTHVYGD IGQDIKYYAI EPELAEDEQT VFEKVRNRLL ERSVMKPAPT EEGEYDDRIE
ELLQETTNVK RRESGDGVLS RLGNITNLGK VDVTEETYEN IRYRLNRDIV GLGPLEPVMR
DPANEDIHVI GPHECYVDHS VYSLIKTTVD FGEPADYEQW LRNMGERIGD PVSDSDPIID
STLPDGSRIN IIYSDDVSLK GPSMTIRQGT EVPLSIFQIT KWGTLSPELA AYLWLALENE
QTVFVVGETA SGKTTTLNSI MSFIPRDSKI YTAEDTSEVL PPHDTWQQLL TREGDDEGTD
VDMFDLVAAA LRSRPDYIIV GEVRGEEGRM AFQAAQTGHP VMLTFHAADI VSMIQRFTGE
PINVPETFMD VADIALFQNR VKQGDDVLRR VTSVQEIEGY SKEMDGVVTR QSFYWDPVED
EIVFQGMNNS FVLEEQIATL LGYEDTRDIY DDLQFRADII RRAIQENVLG YHEVNELIEN
FQRDGVEGLP FDIHRQD