Gene Huta_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHuta_0560 
Symbol 
ID8382827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhabdus utahensis DSM 12940 
KingdomArchaea 
Replicon accessionNC_013158 
Strand
Start bp565696 
End bp568101 
Gene Length2406 bp 
Protein Length801 aa 
Translation table11 
GC content65% 
IMG OID644971622 
ProductNADH dehydrogenase (quinone) 
Protein accessionYP_003129480 
Protein GI257051647 
COG category[C] Energy production and conversion
[P] Inorganic ion transport and metabolism 
COG ID[COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.640167 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCAATCAC CGAGTCAGAG CGTCCTCCTC GTCGTGCTGG CGTTGCCGTT TCTGGCCGCA 
GCGGTCGCGC CGCTGGTCTA TCGCCTGGTT GGCGAGCGCG TCGCCTACTT CGGAGCGGCG
GTCGCAGCAC TCGCCTTCGG GCTGATCGGC ACCCAGTACG GGGCTGAGGG GGTCGTCTCG
ATACCGTGGA TCCCATCGCT TGACGTTTCG CTCGCACTGT ACGTCGATGG CCTCTCGCTG
TTGCTCGGGT TCGTCGTCAG CGGGATCGGT ATCCTGATTT TCACCTATTC GGGCGGATAC
ATGCACGACG AACCGGGGAA AGCGAAGTTC TACACGACGT TGCTCGTGTT CATGGGCGCG
ATGCTCGGGG TCGCCTTCGC CGCCGACCTC CTCGCGCTGT TCGTCTTCTG GGAACTCACG
AGCGTCTCGT CGTTCATCCT GATCGGCCAC TACCAGGACG ATCCAGACTC CCAATACGCC
GCCCGGAAGG CAATGATCAT CACGGTCGCC GGCGGGCTGT TCTTGCTCAT CGCCTTCCTC
CTGTTGCATA CCGTCTCAGC AGACGTCATG GGGACGGCGA CGTTCCGGCT GGCCGGCGAG
GGCTCGATGA TCGAAAACGC CGGGGCGATG CGGGAGAGAC TTCGGTCGGC GGGACTGTTC
GTGCCAGTTC TGGCGCTGCT CGCGGTCGGT GCCGCGGCCA AATCCGCGCA GGTGCCGCTG
CACATCTGGC TGCCCAACGC CATGGAGGCC CCGACACCGG TCTCGGCCTT TCTCCACTCG
GCGACGATGG TCAAAGCCGG CGTGTATCTC ATCGGCCGGT TCCGGCCGCT GCTTGGCTCG
ACCGAGTGGG AACTCCTGTT TGCCGGCCTC GGCCTGCTGA CGATGACCGT CGGCGCGATG
CTCGCGATCA AAGCCGACGA TATCAAGGAA CTGCTCGCGT ATTCGACGGC CTCGCATCTC
GGGCTGATCG TCGCCGGGTT CGGCATACAG TACAAATACG GTGCAGAGAC AGGCGCGTTC
CACATCCTGA ATCACGCGCT GTTCAAGGCG GCGCTGTTCC TCGTCGCGGG GATCGTCGCC
CACGAGGCCG GCAGTCGGCT GCTGTCGGAA CTCGGCGGCC TCTGGCGTGA CCTCCCGATC
ACCGCCGCCG TGGCCGTCGT GGCGGCCCTC GGCATGGCCG GCCTCCCGCC GTTCAACGGT
TTCTACTCCA AGGAACTGCT GTTCGAGGCG ACCTTCCACG CCGCCGAGCA CGCAGGTGGG
CTGTGGTGGC TACTTCCGGT CGTCGCGGTC TTCGGGAGTA TCTTCACGTT CCTGTATTCG
ATCAAGTTCC TCTCGCTGTT CTTCGGCGAC CGGCCGGACG CCCTCGAGCA CGTCCACTCG
CCGCCCCTGC CGATGCTCGC GCCGCCGGTC ATCCTCGCCA CGCTGGCGGG TGTGATCGGC
CTCGGCGGTA TCGGTGGGAC ACTCGGCATG CACTTTGATC CGCTCGAAGA TTTCGTCGAA
CGGGTCATCG TGGCCGCCGG TGTCGAGGAT CCACACTTCG GGTACTATCT TCCCACCTCA
CTCACGCCGG CCGCGGGCAT GAGTGCGGTC ACGATCGGAG TCGGCGTGGT CGCCTATCCC
TACTACGATC GGCTCGCGGC CGTGGTCGAT CGGCTGGCGT CGATCAAGCC GCTGTCGCCG
AACTGGTACT ACGACGGGCT CGTCGGCTGG CTCGATCAAA CGACGGTCGT CACCGAGCGC
ATCCATACCG GGCGGATTCG GACGTACGCG AGCTGGCTCA TGCTCGGCGT CGCCGCACTG
GCGGTCGGTG GCTACGTCGC TGCCGGGATC GTCCTGCCGG CGCTGTCCTC GATCACGCTG
GCTGCCCCGA TCGTCATCGT GCTTGGCGTC GCCGTCGTGG CGGCACTGGC CGTGACGATC
GCACCCTCAC ATGTCGCCGG CGTCCTGACG CTGTCGATCC TCGGGTTCAT GGTCGCCATC
TTCTACATCC TGGCGAACGC GCCGGATCTG GCGCTGACTC AGCTCGTCAT CGAGACGCTC
GTGCTCGTCC TGTTCCTGCT CGTGTTGAAC AAGTTGCCGG CGTTCTACGG CGATCTGAAA
CGCCGCCAGA TAGTCACGGA CACCATCATC TCGGGGGTCG TCGGCGTGAC TGTCTTCCTG
ACGGTGCTCG TCTCGACGGC CGCAACGCCG GGGAAGCCGA TCTACACGTA CTTCCTCGAA
CGCGGTGGGG TCCCCACAGA GCACGGCCAG TGGTTGCTCG AGTGGGGTGG CGGAAGCAAC
ATCGTGAACG TCATCCTCGT CGACTTCCGG GCCTTCGATA CGATGGGGGA AATATCCGTC
GTCGCCATGG CTGCGCTCTC GATCATTACG ATGATCGCGA TGCGGCAACG AGGTGAGACA
CAATGA
 
Protein sequence
MQSPSQSVLL VVLALPFLAA AVAPLVYRLV GERVAYFGAA VAALAFGLIG TQYGAEGVVS 
IPWIPSLDVS LALYVDGLSL LLGFVVSGIG ILIFTYSGGY MHDEPGKAKF YTTLLVFMGA
MLGVAFAADL LALFVFWELT SVSSFILIGH YQDDPDSQYA ARKAMIITVA GGLFLLIAFL
LLHTVSADVM GTATFRLAGE GSMIENAGAM RERLRSAGLF VPVLALLAVG AAAKSAQVPL
HIWLPNAMEA PTPVSAFLHS ATMVKAGVYL IGRFRPLLGS TEWELLFAGL GLLTMTVGAM
LAIKADDIKE LLAYSTASHL GLIVAGFGIQ YKYGAETGAF HILNHALFKA ALFLVAGIVA
HEAGSRLLSE LGGLWRDLPI TAAVAVVAAL GMAGLPPFNG FYSKELLFEA TFHAAEHAGG
LWWLLPVVAV FGSIFTFLYS IKFLSLFFGD RPDALEHVHS PPLPMLAPPV ILATLAGVIG
LGGIGGTLGM HFDPLEDFVE RVIVAAGVED PHFGYYLPTS LTPAAGMSAV TIGVGVVAYP
YYDRLAAVVD RLASIKPLSP NWYYDGLVGW LDQTTVVTER IHTGRIRTYA SWLMLGVAAL
AVGGYVAAGI VLPALSSITL AAPIVIVLGV AVVAALAVTI APSHVAGVLT LSILGFMVAI
FYILANAPDL ALTQLVIETL VLVLFLLVLN KLPAFYGDLK RRQIVTDTII SGVVGVTVFL
TVLVSTAATP GKPIYTYFLE RGGVPTEHGQ WLLEWGGGSN IVNVILVDFR AFDTMGEISV
VAMAALSIIT MIAMRQRGET Q