| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_0482 |
|---|
| Symbol | |
|---|
| ID | 8382749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | + |
|---|
| Start bp | 479110 |
|---|
| End bp | 479757 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644971544 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
|---|
| Protein accession | YP_003129402 |
|---|
| Protein GI | 257051569 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATTC GGGCAGTCTG TTTCGACCTC GACGACACGC TCTTTGCGTA CCGGAAATAC
GCGCGGGCGG GGCTCCGTGC GGCGGCCGAC CGTCTCGAAG CCCGGACCGG CGAGGAGGTA
CACGAGGAGT TGCTGCGGCT GTACTTCACC GAGGGGATCA CCGACGGGAC GTTCGACCAA
CTGCTCGACC GCCACGACCG CAACTCGAAG CTGGTCGACG ACCTCGTCGA TGCCTACCAC
GACGCAAATA CACCGCTGTC ACCGTATCCG GAGACGGAGC CGGTCCTCTC GACATTAAGC
GAGGGCTACC GACTGGGACT CATCACGGAC GGGCGTGGAG GTCACGCCAA ACTCCGTCGC
CTCGGCATCC GATCGTACTT CGACGCAGTG GTGGTCACAC CAACGATCGA GTCGTCCAAG
CGCGAATCCG AGCCGTTCGA GCGGGTCCTC TCGACACTCT CGGTGTCGGC CGACGCTGCA
GTGTACGTCG GAGACGATCC GCGGTTCGAT TTCGAAAATC CCAACCATCT CGGGATGACG
ACGGTTCGAC TCCGTCGCGG CCGCTACAGC GACCTCGAAC CGAAGACCGA CGCGGCGGTA
CCCGATCGTG AGATACCGCA CCTCGAAGCG CTCCTCGATA TCCTCTGA
|
|---|
| Protein sequence | MTIRAVCFDL DDTLFAYRKY ARAGLRAAAD RLEARTGEEV HEELLRLYFT EGITDGTFDQ
LLDRHDRNSK LVDDLVDAYH DANTPLSPYP ETEPVLSTLS EGYRLGLITD GRGGHAKLRR
LGIRSYFDAV VVTPTIESSK RESEPFERVL STLSVSADAA VYVGDDPRFD FENPNHLGMT
TVRLRRGRYS DLEPKTDAAV PDREIPHLEA LLDIL
|
|---|
| |