| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_0407 |
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| Symbol | |
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| ID | 8382674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhabdus utahensis DSM 12940 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013158 |
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| Strand | - |
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| Start bp | 399847 |
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| End bp | 400746 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644971469 |
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| Product | Pre-mRNA processing ribonucleoprotein, binding domain protein |
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| Protein accession | YP_003129327 |
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| Protein GI | 257051494 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.033854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTCGG GGTGTTTCGG CAGTCGCGTG CTTTTTCGCC GTGGGGGCCA ACGGACGACC
ATGAACACTG AAGGCGCCTG GTTTCACGAT GTTTCTGCCG GGGACGATTC GACCGCCCAG
GCCCGAATCA GGGACGGTGA GGCCGACGAC CCCGCCGACT GGCCGGGACT CGCCGTCGAG
ACGGGCTATG CCGACGACGT CGACGCGTAT TACGATGCAT TGCATTCGAT CACGACAGCG
GCGGCCGAGA CAGCGGTCCG GGAGCGCGAG CGGGCCGACG ATCAGCAACT CAAACACGCG
GTTCGGGCGA TGGACGACTG TGAACGAACC GCCAACGAAC TCGCCGAGCG CGTCGCCGAG
TGGGCCGGAA CCAGACTCGC GGATGCCGGT TCCGGGGTCG GGTACGCTCG TGAGTTAGTA
ACCGGCGAGA CCAGCGACCG GGCAGATGCC GACCTCGTTT CGCTGGCCCA GCGCGTCGTT
GCCCTCGACG ACGAGGCCGC TGAACTCCGC CGGACGATCG AAACCACTGC GCCGGATGTC
GCGCCCAACC TCTCGGCGCT CGCGGGACCA GTGCTCGCCG CCAGGCTCAT CTCGCTCGCC
GGCGGCCTCG AACCGCTGGC AAAAAAGCCG AGCGGGACTG TCCAGGTGCT CGGCGCGGAG
GACGCGCTGT TTGCCCATCT CCAGGGCTCG GCCCCCTCGC CGAAACACGG CATCATCTAC
ACCCACGAGT ACGTCAGTGG AACGGTACCA GCCCAGCGTG GGTCGGCCGC CCGTGCACTG
GCTGGCAAAC TCACCATCGC CGCACGGATC GATCATTACA GCGGCGACCG ACGACCCGAG
CTCGACGCTG AACTCGATGA CCGGATCGAG ACGATCCGCT CGCGAGGTGA AGGGGCATGA
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| Protein sequence | MDSGCFGSRV LFRRGGQRTT MNTEGAWFHD VSAGDDSTAQ ARIRDGEADD PADWPGLAVE
TGYADDVDAY YDALHSITTA AAETAVRERE RADDQQLKHA VRAMDDCERT ANELAERVAE
WAGTRLADAG SGVGYARELV TGETSDRADA DLVSLAQRVV ALDDEAAELR RTIETTAPDV
APNLSALAGP VLAARLISLA GGLEPLAKKP SGTVQVLGAE DALFAHLQGS APSPKHGIIY
THEYVSGTVP AQRGSAARAL AGKLTIAARI DHYSGDRRPE LDAELDDRIE TIRSRGEGA
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