| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_0375 |
|---|
| Symbol | |
|---|
| ID | 8382639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | + |
|---|
| Start bp | 363222 |
|---|
| End bp | 367283 |
|---|
| Gene Length | 4062 bp |
|---|
| Protein Length | 1353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644971434 |
|---|
| Product | DNA polymerase B region |
|---|
| Protein accession | YP_003129295 |
|---|
| Protein GI | 257051462 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
|---|
| TIGRFAM ID | [TIGR01443] intein C-terminal splicing region
[TIGR01445] intein N-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATT CCGGGGAGCA GCGCGGGCTT GGAGCGTTTG CCGACGACGA CAGACCGGCT
GCCGAGGCAC GTGCAGTCGC GGGCAACGGT GGCCACGAAG CGAGCGTCGT CGACGCCGAC
GAATGGCGAT ACCCCGAGGC TGATGGCACT GTCGAACTCG CAGTGACCCA GGTCGACTAC
ACGATCGAGG GGGGAGGAAG CGACGAGTAC CCGGTCGTTC ACGTTTTCGG ACGCAGTGCA
GACGGCGAGC TCTTCCACGT CCAAGTCTAC GAGTTTCGAC CATACTTCTA TGCGCCGGCC
GACAACGTCG ACGAGGAGCG ACTCGCGAAT TACGACAGCG TCACCGGCTG GGAACGGACT
GGCGACGATG GTGAACCGTA CGAGTCCATT CGTGGCGAGG AACTCGTCAG GATCTTCGGC
CAGACACCGC GGGACGTCGG GCAGATCCGT GACGACTTCG ATCACTACGA GGCGGACATC
CTCTTCCCGA ATCGCCTCCT CATCGACAAG GACATCACCA GCGGCATCCG GGTCCCCGAT
CGTCGCACGG AGAACGGAAC GATCCGGATC CCACACGACG AGATCGAAGC CATCGACTAC
GACGCCGAAG CGCGAGTCAA CACCTTCGAC ATCGAGGTCG ACGACCGATC GGGTTTCCCC
GAGGACGGGG AGGAACCCAT CATCTGTCTC ACGAGCCACG ACTCCTATCG CGACGAGTAC
GTCGTCTGGC TGTACGACTC GCCGGTCGGG ATCGACCCGC CGGAGGCCCT CGAACAGTAC
GAGCCCCTGG AAGACGAATT CGAGGCGGAT GTCCGTGTCT TCGAGGAAGA GGAGCGGATG
CTCGAAGCGT TCCTCGAGTA TATCGACGAG ACCGATCCGG ACATCCTGAC GGGCTGGAAC
TGCCTGCCCG CGGACGCTCA GATCTCGATG GCTGATGGGG CCACCAAGGA GATTCAGGAC
GTTCAGATCG GGGATACAGT GGTCGGTAAC GACGAGCAGG AGACGACCGT TGCCGAGGTC
ACGAGCAAGT GGGAAAGTCG AAAGGAAGTT TTCGAGTTCG AACTCGAAGA CGGTACGACA
CTTCGATCGT CCGGCGATCA TCGAATCAAG GTCGGCGACG ACCAGCAAGT GAGTTGGAAA
GACGGTCGTG ATATCGAACC GGGAGAATAC GTTCTCAAGC CGCGTACGCT TACTGCCCGC
GAATACGTTC CATCCCTTTC CGAGCTGATC CCGCTCGACC GACAGCGATT TTCGGATAAA
TCGTCCGTCA AAGCGTTCAA ATCCGGCCTT CCCGAAGGAG CCATTACCGA ACTTTCGGAG
ACGTTCGGTG TGTCGAAGGA GACGCTTTAC CATCCGACAC CGAGTGTCTG GCACCTCGAA
CGATGTCGTA TCGCGAGGGA AACGTACGAC GCCGCGCTGC CGGACGGTGG TCGGGAGTAT
CGGCGCACCG GCGTGGATTT GGATCGAAAT ATCACTGAAA AAGAACTGTA CCTGGCCGGA
CTCGTCCTGA CTGACGGATC GATGTCGCAG TCCGATGGAG TCCGATTCTA TAATACGCGG
AGAGAACTCC ACGAGGAATT CCCGGGGGAC AACCACCTCG AACCGGACGG GAAGGGCTGT
TACAAGCAGA ACGTCCTCGA TTATGCCCAG ATGTATGCGC TCAACGGACT GGGCATCCCG
TTCGGGAACA AAAACGAACG GGGAGTCGAT CTCTCGACGG TATACGAACT CCCGGAAGCG
TACATCGGGC GATTCCTGGC CGGCGTCGTC GACGGGGACG GAAACGTCTC GTCGTCTGTC
ACTGTCGCCG CGGAAAATCA CTCGATCGGC GACTGGTACG CGAAGCTGTT CAGACGACTC
GGTATCTACG CTGAACGGAC GAACGAAACT GTCCGCGTCT CGAGTGCGAA ACGCGACATC
AAGCGGTTCA AGCAGTCCGT CTTGCCGTAC ATGAGTCACG AAGAGAAGGT TGCCGCTATC
GAGGAGTTTG ACGGGGGGAA AAGCGGGCAG TCGGAAAACA TACCGTACGC GATCTTCGAG
GCGGAGACAG GATCCGACGA GAAGCGCATC GGCCGGGACA AGCACCGTCG GGGAACCCAT
CTCAAACGAC ACGAGACGTC GTCCACCGAA TGGGAAGAGT ACGTCTTCGT CGCCGTAGAG
AACGTCGAGA TCGTCGGCAC GCAGACGACC TACGATATCG AAACCACGAC ACACAGCTTC
CTCGCTGATG GATGTCTCGT CCATAATTGC GACGACTTCG ACGCCCCCTA TCTCATCGAC
CGATTACAGG AACTCGACCC GGGAACCGAT CGAAACCTCG ACATGAACCG GCTCTCCCGG
GTCAACGAGG TCTGGGAGAG CGACTGGCAA GGGCCGGACA TCAAGGGCCG GGTCGTCTTC
GATCTCCTGC GGGCGTACAA ACGGACGCAG TTCACCGAAC TCGATTCCTA CCGCTTAGAG
GACGTCGGCC AGGAGGAACT CGGCGCGGGC AAGGAGACGT ATACGGGTGA CATCGGGACG
CTGTGGGAAG AGGATCCCGA GCGACTCCTC GAGTACAACC TCCGTGACGT CGAACTCTGC
GTCGAACTCG ATCGCAAACA GGACATCATC GCCTTTTTCG AGGAGGTAGC CACCTTCGTG
GGCTGCAAAC TCGAGGACGC CCCGACGCCG GGCGACGCCG TCGACATGTA CGTCCTCCAC
AAGGCTTTCG GGAACTTCGT CCTGCCCTCG AAGGGGACCG TCGAGTCGGG CGAGGAGTTC
GAGGGCGGAG CCGTCTTCGA GCCGATCAGC GGCATCAAGG AGATGGTAAG TGTCCACGAC
CTGAAATCTC TATATCCGAT GTGCATGGTG ACGATTAATG CATCCCCGGA GACGAAGGTC
GACCCCGAAA CCTTCGACGG GGAGACGTTC CGTGCACCGG ATCCCAGCGG CCAGCACTTC
CGGAAGGAAC CCGACGGGAT CGTCCGGGAG ATGGTCGAAG AGTTATTGTC AGAGCGAGAA
GAAAAGAAGT CCCTCCGGAA CGATCACGAG CCCGGAACCG AGGACTACGA GCTCTATGAC
CGCCAGCAGG GAGCCGTCAA GGTTATTATG AATAGTTTAT ATGGGGTTTC GGGGTGGGAC
CGATTTCGCC TGTACGACAA GGACAACGCG GCGGCGGTAA CCGCAACAGG GCGGTCGGTG
ATCGAGTACA CCGAGTCGGC CGTTAACGAT CTCGGCTACG ACGTGACATA CGGCGATACT
GATAGCGTCA TGATAAGTAT GGGAACGGAC ATGTCCGTCG AGAATGCCAT CGACCGCTCG
TTCGAGATCG AGGAGGCGAT CAACGCCTCC TACGACGAAT TCGCCAGCGA GACGCTCAAT
GCTGAGGAGC ATCGGTTCCA GATCGAGTTC GAGAAGCTCT ACCGGCGCTT TTTCCAGGCG
GGCAAGAAAA AGCGCTATGC GGGCCACATC GTCTGGAAGG AGGGCAAGGA CGTCGACGAC
ATCGACATCA CAGGCTTCGA ATACCAGCGC TCTGACATCG CACCGATCAC CAAGCGCGTC
CAGAAGGAAG TTCTGGATCT GATCGTCACG GAGGGCGACG TCGAGGCCGT CACGGAGTAC
CTCCACGACG TGATTGCGGA TTTCCAGGCG GGCAACGTCG ACATCGAGGA CGTCGGTATC
CCCGGCGGGA TCGGCAAGCG CCTGAACAAT TACGACACCG ACACGGCCCA CGTTCGGGGG
GCGAAGTACG CCAACGAGCT CCTGGGGACG AACTTCCAGC GGGGCAGCAA GCCGAAACGG
CTCTACCTCA AGAAGGTCCA CCCCGAGTAC TTCCGCCGGA TCGAGGACGA ACGTGGTCTC
GATCCCTCCC GGGATCTCAT CTACGGCGAG TTCAAGCGTG ATCCGGACGT GATCTGCTTC
GACGTCGCCG AACAAATCCC CGAGGAGTTC GAGGTGGACT GGGAGAAAAT GCTGGAGAAA
ACACTCAAAG GCCCGATCGC CCGCGTTATC GAGGCCCTCA ACGTCTCCTG GCAGGAGGTC
AAAAGCGGCC AGGAACAGAC GGGACTCGGA CAGTATATGT GA
|
|---|
| Protein sequence | MTDSGEQRGL GAFADDDRPA AEARAVAGNG GHEASVVDAD EWRYPEADGT VELAVTQVDY
TIEGGGSDEY PVVHVFGRSA DGELFHVQVY EFRPYFYAPA DNVDEERLAN YDSVTGWERT
GDDGEPYESI RGEELVRIFG QTPRDVGQIR DDFDHYEADI LFPNRLLIDK DITSGIRVPD
RRTENGTIRI PHDEIEAIDY DAEARVNTFD IEVDDRSGFP EDGEEPIICL TSHDSYRDEY
VVWLYDSPVG IDPPEALEQY EPLEDEFEAD VRVFEEEERM LEAFLEYIDE TDPDILTGWN
CLPADAQISM ADGATKEIQD VQIGDTVVGN DEQETTVAEV TSKWESRKEV FEFELEDGTT
LRSSGDHRIK VGDDQQVSWK DGRDIEPGEY VLKPRTLTAR EYVPSLSELI PLDRQRFSDK
SSVKAFKSGL PEGAITELSE TFGVSKETLY HPTPSVWHLE RCRIARETYD AALPDGGREY
RRTGVDLDRN ITEKELYLAG LVLTDGSMSQ SDGVRFYNTR RELHEEFPGD NHLEPDGKGC
YKQNVLDYAQ MYALNGLGIP FGNKNERGVD LSTVYELPEA YIGRFLAGVV DGDGNVSSSV
TVAAENHSIG DWYAKLFRRL GIYAERTNET VRVSSAKRDI KRFKQSVLPY MSHEEKVAAI
EEFDGGKSGQ SENIPYAIFE AETGSDEKRI GRDKHRRGTH LKRHETSSTE WEEYVFVAVE
NVEIVGTQTT YDIETTTHSF LADGCLVHNC DDFDAPYLID RLQELDPGTD RNLDMNRLSR
VNEVWESDWQ GPDIKGRVVF DLLRAYKRTQ FTELDSYRLE DVGQEELGAG KETYTGDIGT
LWEEDPERLL EYNLRDVELC VELDRKQDII AFFEEVATFV GCKLEDAPTP GDAVDMYVLH
KAFGNFVLPS KGTVESGEEF EGGAVFEPIS GIKEMVSVHD LKSLYPMCMV TINASPETKV
DPETFDGETF RAPDPSGQHF RKEPDGIVRE MVEELLSERE EKKSLRNDHE PGTEDYELYD
RQQGAVKVIM NSLYGVSGWD RFRLYDKDNA AAVTATGRSV IEYTESAVND LGYDVTYGDT
DSVMISMGTD MSVENAIDRS FEIEEAINAS YDEFASETLN AEEHRFQIEF EKLYRRFFQA
GKKKRYAGHI VWKEGKDVDD IDITGFEYQR SDIAPITKRV QKEVLDLIVT EGDVEAVTEY
LHDVIADFQA GNVDIEDVGI PGGIGKRLNN YDTDTAHVRG AKYANELLGT NFQRGSKPKR
LYLKKVHPEY FRRIEDERGL DPSRDLIYGE FKRDPDVICF DVAEQIPEEF EVDWEKMLEK
TLKGPIARVI EALNVSWQEV KSGQEQTGLG QYM
|
|---|
| |