| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_0042 |
|---|
| Symbol | |
|---|
| ID | 8382302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 41238 |
|---|
| End bp | 42998 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644971100 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_003128964 |
|---|
| Protein GI | 257051131 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0382499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGCG AACAGCTCGC ATTGACGGTC TTGATGGGAA TTTTGCTGGT CGGGGTTGCG
GCGTTTCTCA CGCGTATCGA AGACTGGCGG AGCTACGCGT CACCGACGGC CAGTGGCGGG
ACCGTCAGCG AGACAGGATA CGGCCACCGG GAGAAGCCCG CCGGGGTGCT CCGGTGGCTC
ACGACAGTCG ATCACAAGGA CATCGGATTG CTCTACGGGC TCTTTGCACT GATTGCGCTC
GCGGTCGGTG GCCTGGCCGT CATGGTCATG CGGCTCGAAC TGGTCACTCC GTCTTCGAAC
ATCGTGAGTG CGAGCTTCTA CAACGCGTTG CTCACGAGCC ACGGCATCAC AATGTTGTTC
CTCTTCGGAA CGCCGATCAT CGCGGCCTTC GGGAACTACT TCATCCCGCT ACTGATCGGG
GCTGACGACA TGGCCTTCCC CCGGATCAAC GCGATCGCGT TCTGGCTGTT GCCGCCGGGC
GCGTTACTCA TCTGGAGTGG CTTTCTCATC CCGGGGATCG CCCCCTCCCA GGCGTCCTGG
ACGATGTACG CGCCGCTGTC GGTCGAACAG CCCCATCTCG GGACGGACAT GATGTTGCTG
GGACTCCATC TGACGGGCGT CTCGGCGACG ATGGGGGCGA TCAACTTCAT CGTCACAATC
TTCACCGAAC GCGGTGATGA CGTCTCCTGG GCGAACTTAG ACATCTTCTC CTGGACGATG
CTCACCCAGT CGGGGATCAT CCTCTTCGCG TTCCCGCTGC TGGGCAGCGC ACTCATCATG
TTGCTGCTCG ATCGGAACCT CGGGACGCTG TTCTTCGCCG TCGACGGCGG GAACCCGATA
CTGTGGCAAC ATCTGTTCTG GTTCTTCGGC CATCCGGAGG TGTACATACT GGTGTTGCCA
CCGATGGGGC TGATAAGCTA CATCATCCCG CGGTTCTCGG GTCGGAAGCT GTTCGGGTTC
AAGTTCGTCG TCTACTCGAC GCTGGCGATC GGCGTGCTCT CCTTCGGCGT CTGGGCCCAC
CACATGTTCG CGACGGGGAT CGACCCGCGA CTCCGGGCGA GTTTCATGGC CGTCTCCTTG
GCGATCGCGA TACCGAGCGC AGTCAAGACG TTCAACTGGA TCACGACGAT GTGGAACGGC
CGCATCAGGC TAACTACCCC GATGCTGTTC TGCATCGGAT TCGTGGCAAA CTTCATCATC
GGCGGCGTGA CTGGCGTGTT CCTGGCGTCG ATCCCGATCG ACCTGATCCT GACGGACACT
TACTACGTCG TCGGGCACTT CCATTACGTG ATCATGGGGG CGATCGCCTT CGCGGTGTTC
GCCGGCGTCT ACTACTGGTT CCCCATTTAC ACTGGGCGGA TGTACCAGCG CACGCTGGGC
AAGTGGCACT TCTGGCTGAC CATGATCGGC ACGAACGTGA CGTTCTTCGC CATGATCCTG
CTGGGCTACG TCGGCCTGCC GCGCAGACTT GCAACCTACA ACGCCATCAC CGTCGGCCCG
ATCGACGTCA TCACGCTCCT CCACCAGGCC GCCACCGTCG GCGCACTGAT CCTGTTCGTG
GGGCAACTCG TCTTCGTCTG GAACATTCTC CAGTCGTGGC TCGACGGCCC GAAACTCACC
GACGGCGACC CGTGGGATCT CAAGGACGAC GGCCTGTTCA CCCGTGAGTT TGCCTGGAAC
GAGGATCGAA TCACTGCGGA CGAGACGGAA GCAGACGCCG ATCTATGGGC CGACGGCGGC
GAATCTGACG AGACCCAATA G
|
|---|
| Protein sequence | MAGEQLALTV LMGILLVGVA AFLTRIEDWR SYASPTASGG TVSETGYGHR EKPAGVLRWL
TTVDHKDIGL LYGLFALIAL AVGGLAVMVM RLELVTPSSN IVSASFYNAL LTSHGITMLF
LFGTPIIAAF GNYFIPLLIG ADDMAFPRIN AIAFWLLPPG ALLIWSGFLI PGIAPSQASW
TMYAPLSVEQ PHLGTDMMLL GLHLTGVSAT MGAINFIVTI FTERGDDVSW ANLDIFSWTM
LTQSGIILFA FPLLGSALIM LLLDRNLGTL FFAVDGGNPI LWQHLFWFFG HPEVYILVLP
PMGLISYIIP RFSGRKLFGF KFVVYSTLAI GVLSFGVWAH HMFATGIDPR LRASFMAVSL
AIAIPSAVKT FNWITTMWNG RIRLTTPMLF CIGFVANFII GGVTGVFLAS IPIDLILTDT
YYVVGHFHYV IMGAIAFAVF AGVYYWFPIY TGRMYQRTLG KWHFWLTMIG TNVTFFAMIL
LGYVGLPRRL ATYNAITVGP IDVITLLHQA ATVGALILFV GQLVFVWNIL QSWLDGPKLT
DGDPWDLKDD GLFTREFAWN EDRITADETE ADADLWADGG ESDETQ
|
|---|
| |