Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Huta_0019 |
Symbol | |
ID | 8382279 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhabdus utahensis DSM 12940 |
Kingdom | Archaea |
Replicon accession | NC_013158 |
Strand | - |
Start bp | 20245 |
End bp | 20931 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644971077 |
Product | Bacterio-opsin activator HTH domain protein |
Protein accession | YP_003128941 |
Protein GI | 257051108 |
COG category | [R] General function prediction only |
COG ID | [COG3413] Predicted DNA binding protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.67767 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAGGGTA TTCGGGCGAA ACTCGTCATC GAGGAACCAC CCCAGTGTGA CGTCGCGGCT GTGTCCCGGG ACTGTGGACC AGTGGCATCG GTGTCACGGA GCGCCGTCCC GGACGAGGAT GGGCGGGTCC ACGACGAGTT CACTGTCCGC GAGGGCGATT GTCCGGACAC GCTGGGTGAC GCCACAGCGA TCTTTCAGGA TGATCGCCGG ACGATCTATC GGCTGGCGCG ATCCCGTGGC CAGGGCTGTG CTTGTGAATG TATCGAGCGA GAAGGCTGTA CCGTTCGAGA CGTACAGGTC GTCGACGGAA CGCTGTTCGT GACCGTCCTT GCCGCCGATC TCGATGGCAT CAGAGCCATT GTCTCAACAC TTCGAGAATC CCGTGATGGC GTCCAGGTAG GAACACTCGT CCGAGCCCCG CCGGAGAGCG AATCGGGGCC GCTGTGGGTC ACTGATCCTG GCGAATTGAC GGCCCGCCAA CGGGAAGTCT TAGAGACTGC ATACGAAATG GGTTACTTCG AATATCCACG GAACGCCACT GCTGAAGCGG TCGCAACGGA ACTTGACGTC GCGACGCCGA CGTTCACCGA ACATCTGGCG GCCGCCCAGC GCAATCTCCT GGAAGGGTTC CTGGACGGGT CAGATAACCA GTCCGACACG ACCATCCAAT CAAGTCACGG ACAATAA
|
Protein sequence | MEGIRAKLVI EEPPQCDVAA VSRDCGPVAS VSRSAVPDED GRVHDEFTVR EGDCPDTLGD ATAIFQDDRR TIYRLARSRG QGCACECIER EGCTVRDVQV VDGTLFVTVL AADLDGIRAI VSTLRESRDG VQVGTLVRAP PESESGPLWV TDPGELTARQ REVLETAYEM GYFEYPRNAT AEAVATELDV ATPTFTEHLA AAQRNLLEGF LDGSDNQSDT TIQSSHGQ
|
| |