Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_7271 |
Symbol | |
ID | 8363465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 9086893 |
End bp | 9090147 |
Gene Length | 3255 bp |
Protein Length | 1084 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644969404 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003126871 |
Protein GI | 256426218 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000107039 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.655848 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAGAC ATGTCTACCG CACCTTTGCG TGTTGCTGGT TGTTGTTGTT ATTATTTGCC AGCGCCGCAT TCGCCCAGAC TAAAATTACC GGTAAAGTCA CCGACGAGGC TTCCGGTAAC CCTTTGCCCG GAGTAACAGT GGCAGTTAAA AATTCAGGTA AGGGTACGGC CACTGACCCT GCTGGTAACT TCAGCGTTAC CGCCAAAAAA GGTGAGACAC TTGTGTTCTC ATTTGTAGGT TATACCCAAC AGGAGTTCGT ACTTGGAGAG GCTACCACGG TGAATATCGT GCTCTCTGAA AAAGTAGGTT CTCTGGATGA AGTGGTTGTA ACAGGTTACG CCACGCAGAA AAAGAAAGAC CTGACAGGTG CTGTATCTGT TGTAAACGTA GACCAGATCA GCCGTCAGCC CACAGCACAG GTGAGCAATC AGTTACAGGG TCAGGTATCC GGTATCACTG TACTGGGTTC TGGTCAGCCG GGCCAGGAGC CGCAGGTGCG TATCCGTGGT GTAAATACGT TTGGTAACAA CACGCCGCTG TACGTTATTG ATGGTGTGCC TACGCAGAAC ATTGCAGATC TGAATCCCAA TGACGTTGCA TCCATGCAGG TACTGAAAGA TGCGGGATCT GCATCTATTT ATGGTGCAAG AGCTGCAAAC GGCGTGGTAA TCGTTACGAC TAAACGCGGT AAAGCCGATG GTAAAGTGCG TGTTACTTAT GACGGTTACT ATGGTACACA ACGTCCAAAA GGAGGTAATG TATGGGACAT CCTCAATTCT CAGGAAATGG CTGATCTGAA ATGGATGGCG CTCAAAAATA CCAATCCGAA TGTTGTTTAT AATGATGGAT TATATGGTAC AGGCGCTACA CCCAGACTGC CTGACTACAT CGCTCCAGGT GGTCTGATGG AAGGAGATCC TAATGTAAAT CCATCAAAAT ATTTTGTTGA TCCTAACTAC AAAACCCCTG CAGACCTGGA TAAATTCTAT CGTATTACCA GGGCTAATAA ACAGGGTACA GACTGGTTCC ATGAAATATT CAAACCAGCT TCTATTACGA GCCATAACAT CTCTGTAGGT GGTGGCGGCG AACAGGGCGC TTATTTCCTG TCATTTAACT ATTTTGATCA GAAAGGTACC TTACAGAATA CTTATCTGAA ACGTTACTCT ATCCGTTCCA ATAGTTATTA CAATGTGAGC AAACATGTAC GCATCGGTGA AAACATGGCC TTCTCCGTAA TTGACAACCC CCGTATCACT GCTTTAACAG AAGGAAGTGG TATTGGTATG GCATTCCGCG AACAGCCTAT CATTCCGGTA CATGATATCA ATGGTAATTT TGCCGGTTCG TTCAGTACAA ATGGCGCGCA GTTGGGTAAC GCCCGTAACC CGGTTGCTAT ACAGGACCGT ACGAGGGATA ACCGTGGTCT GATCAACCGT TTGCTGGGTA GCGTGTATGG AGAAGTAGAC TTCCTTAAAT ATTTCACCTT CCGCACTACC TTCGGTGGAG AGATCTATTC AGGTTACACA CATTCGTTCA CATATCCTGA ATACGAAAAT GCAGAGAATA ATAAAGTAAA TTCATATACA GAAACGTCTA TCAATAGCCG TAACTATACA TGGACTAACG CATTGACCTA CGCACAGACG ATCAATTCGA TCCATAATAT CAAGGTTGTA GCAGGTACAG AGGCTTATGA TAATCGTGAC CGCTTTTTAA CAGCAACTAC GCAGAACTAC TTCAGCTTCG ATCCTGATTT TACTAATCTG GGTTCCGGTA CTGGTACCAT GAACCATAGC AGTACTAATG GTACGGATGG ACTTTTCTCC ATATTCGGAA GGTTAGATTA CAGTCTGATG GATAAATATC TGTTAGGTGC AGTTGTTCGC CGTGACGGTT CCAGCAGGTT TGGTGCTAAT TACCGCTATG GTTGGTTCCC GGCTGTCAGC GCAGGCTGGC GTATTTCACA GGAAGCTTTC CTGAAACAGG TATCCTGGAT CTCAGACTTA AAGATCAGAG GTGGTTATGG CGTTATGGGG AATCAGCTCA ACGTAACTCC TGCGAATGCA TTTACCCAGT ATGGTCTTAA CAAGGGATCT TCTTTCTATG ATATTGGTGG AACGTCGAAT ACCATTAACT CAGGTTTCTT ACAGACTTAC ATCGGTAACC CGAACGCTAA GTGGGAAAAC AATATCAATA TGAATATTGG TATTGATGCG ACGCTCTTTA AAGGTAAACT GGAAATCAAC GCTGATTACT ATCAGAAACG TGTGGAAGAC CTGTTATTCA AACCTGAACT GGCTGCAACT GCCGGACGTC CGACACCTCC TGATGTGAAC ATTGCGGAAA TGAAGAACCA GGGTATTGAT CTCGGCATCA ACCTGGTAAA TCTTAATCTG TCAAAAGATC TGATCTTAAC ACTGGGTGCT ACGTTTACAA GCTATTCCAA CAAGATCGTG AATGTATCTG GTGATGCGCC GTACTTCGAT CTGGAAGCAC GTCGTTTCAA CGGTAATTTC ATTATCCGTA ATGCGGTAGA TCATCCGATT TCCAGTTTCT ACGGTTATAA AACCGTTGGT TTCTGGAATT CTGCTCAGGA AGTTGCAACA GCAAATGATA ATGCACAGAA AGCGACCAAC AATCCTAATG CAGTTTACCA GACTGGTATT GGCGTGGGAC GCTTCCGTTA TCAGGATACA AACGGTGATG GTATCATCAC TGAGGCGGAC CGCACCTTCC TTGGTAACCC AAGCCCTGAC TTCAGTTATG GTCTGAACAT CGAACTGAAA TATAAAGGCT TCGATTTCAC GGCGTTCTTC TACGGTACGC AGGGTAATGA AATCTGGAAT CAGGTACGCT GGTGGACTGA CTTCTATCCA TCTTTCGCAG GTGCGAAAAG TAAAACTGCG CTGTATGACT CATGGAGACC TGACCATCAG AATGCAAAAG CACCTATCCA GGAGAACGAA GGATCTTTCA GTACCAATAC AGTTCCTAAC TCTTTCCTCG TAGAAAATGG TTCTTATCTG CGTGCGAAGA ACCTGATGTT AGGCTATACA CTGCCAAAAG CATTGTTAAA CCGCGTGGGT ATTGAGAAAT TCCGCATTTA CGTACAGGCT GCAAACCTGT TCACTATTAC CAAATACACG GGTATTGATC CTGAGATTAC AGGTAGTACG CAGGCATTTG GTCTGGACGA GGGAGCTTAT CCTAACCAAC GTCAGTTCCT GGTGGGCGTT AATGTTGGCT TCTAA
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Protein sequence | MKRHVYRTFA CCWLLLLLFA SAAFAQTKIT GKVTDEASGN PLPGVTVAVK NSGKGTATDP AGNFSVTAKK GETLVFSFVG YTQQEFVLGE ATTVNIVLSE KVGSLDEVVV TGYATQKKKD LTGAVSVVNV DQISRQPTAQ VSNQLQGQVS GITVLGSGQP GQEPQVRIRG VNTFGNNTPL YVIDGVPTQN IADLNPNDVA SMQVLKDAGS ASIYGARAAN GVVIVTTKRG KADGKVRVTY DGYYGTQRPK GGNVWDILNS QEMADLKWMA LKNTNPNVVY NDGLYGTGAT PRLPDYIAPG GLMEGDPNVN PSKYFVDPNY KTPADLDKFY RITRANKQGT DWFHEIFKPA SITSHNISVG GGGEQGAYFL SFNYFDQKGT LQNTYLKRYS IRSNSYYNVS KHVRIGENMA FSVIDNPRIT ALTEGSGIGM AFREQPIIPV HDINGNFAGS FSTNGAQLGN ARNPVAIQDR TRDNRGLINR LLGSVYGEVD FLKYFTFRTT FGGEIYSGYT HSFTYPEYEN AENNKVNSYT ETSINSRNYT WTNALTYAQT INSIHNIKVV AGTEAYDNRD RFLTATTQNY FSFDPDFTNL GSGTGTMNHS STNGTDGLFS IFGRLDYSLM DKYLLGAVVR RDGSSRFGAN YRYGWFPAVS AGWRISQEAF LKQVSWISDL KIRGGYGVMG NQLNVTPANA FTQYGLNKGS SFYDIGGTSN TINSGFLQTY IGNPNAKWEN NINMNIGIDA TLFKGKLEIN ADYYQKRVED LLFKPELAAT AGRPTPPDVN IAEMKNQGID LGINLVNLNL SKDLILTLGA TFTSYSNKIV NVSGDAPYFD LEARRFNGNF IIRNAVDHPI SSFYGYKTVG FWNSAQEVAT ANDNAQKATN NPNAVYQTGI GVGRFRYQDT NGDGIITEAD RTFLGNPSPD FSYGLNIELK YKGFDFTAFF YGTQGNEIWN QVRWWTDFYP SFAGAKSKTA LYDSWRPDHQ NAKAPIQENE GSFSTNTVPN SFLVENGSYL RAKNLMLGYT LPKALLNRVG IEKFRIYVQA ANLFTITKYT GIDPEITGST QAFGLDEGAY PNQRQFLVGV NVGF
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