Gene Cpin_7271 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_7271 
Symbol 
ID8363465 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp9086893 
End bp9090147 
Gene Length3255 bp 
Protein Length1084 aa 
Translation table11 
GC content45% 
IMG OID644969404 
ProductTonB-dependent receptor plug 
Protein accessionYP_003126871 
Protein GI256426218 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4206] Outer membrane cobalamin receptor protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000107039 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.655848 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAGAC ATGTCTACCG CACCTTTGCG TGTTGCTGGT TGTTGTTGTT ATTATTTGCC 
AGCGCCGCAT TCGCCCAGAC TAAAATTACC GGTAAAGTCA CCGACGAGGC TTCCGGTAAC
CCTTTGCCCG GAGTAACAGT GGCAGTTAAA AATTCAGGTA AGGGTACGGC CACTGACCCT
GCTGGTAACT TCAGCGTTAC CGCCAAAAAA GGTGAGACAC TTGTGTTCTC ATTTGTAGGT
TATACCCAAC AGGAGTTCGT ACTTGGAGAG GCTACCACGG TGAATATCGT GCTCTCTGAA
AAAGTAGGTT CTCTGGATGA AGTGGTTGTA ACAGGTTACG CCACGCAGAA AAAGAAAGAC
CTGACAGGTG CTGTATCTGT TGTAAACGTA GACCAGATCA GCCGTCAGCC CACAGCACAG
GTGAGCAATC AGTTACAGGG TCAGGTATCC GGTATCACTG TACTGGGTTC TGGTCAGCCG
GGCCAGGAGC CGCAGGTGCG TATCCGTGGT GTAAATACGT TTGGTAACAA CACGCCGCTG
TACGTTATTG ATGGTGTGCC TACGCAGAAC ATTGCAGATC TGAATCCCAA TGACGTTGCA
TCCATGCAGG TACTGAAAGA TGCGGGATCT GCATCTATTT ATGGTGCAAG AGCTGCAAAC
GGCGTGGTAA TCGTTACGAC TAAACGCGGT AAAGCCGATG GTAAAGTGCG TGTTACTTAT
GACGGTTACT ATGGTACACA ACGTCCAAAA GGAGGTAATG TATGGGACAT CCTCAATTCT
CAGGAAATGG CTGATCTGAA ATGGATGGCG CTCAAAAATA CCAATCCGAA TGTTGTTTAT
AATGATGGAT TATATGGTAC AGGCGCTACA CCCAGACTGC CTGACTACAT CGCTCCAGGT
GGTCTGATGG AAGGAGATCC TAATGTAAAT CCATCAAAAT ATTTTGTTGA TCCTAACTAC
AAAACCCCTG CAGACCTGGA TAAATTCTAT CGTATTACCA GGGCTAATAA ACAGGGTACA
GACTGGTTCC ATGAAATATT CAAACCAGCT TCTATTACGA GCCATAACAT CTCTGTAGGT
GGTGGCGGCG AACAGGGCGC TTATTTCCTG TCATTTAACT ATTTTGATCA GAAAGGTACC
TTACAGAATA CTTATCTGAA ACGTTACTCT ATCCGTTCCA ATAGTTATTA CAATGTGAGC
AAACATGTAC GCATCGGTGA AAACATGGCC TTCTCCGTAA TTGACAACCC CCGTATCACT
GCTTTAACAG AAGGAAGTGG TATTGGTATG GCATTCCGCG AACAGCCTAT CATTCCGGTA
CATGATATCA ATGGTAATTT TGCCGGTTCG TTCAGTACAA ATGGCGCGCA GTTGGGTAAC
GCCCGTAACC CGGTTGCTAT ACAGGACCGT ACGAGGGATA ACCGTGGTCT GATCAACCGT
TTGCTGGGTA GCGTGTATGG AGAAGTAGAC TTCCTTAAAT ATTTCACCTT CCGCACTACC
TTCGGTGGAG AGATCTATTC AGGTTACACA CATTCGTTCA CATATCCTGA ATACGAAAAT
GCAGAGAATA ATAAAGTAAA TTCATATACA GAAACGTCTA TCAATAGCCG TAACTATACA
TGGACTAACG CATTGACCTA CGCACAGACG ATCAATTCGA TCCATAATAT CAAGGTTGTA
GCAGGTACAG AGGCTTATGA TAATCGTGAC CGCTTTTTAA CAGCAACTAC GCAGAACTAC
TTCAGCTTCG ATCCTGATTT TACTAATCTG GGTTCCGGTA CTGGTACCAT GAACCATAGC
AGTACTAATG GTACGGATGG ACTTTTCTCC ATATTCGGAA GGTTAGATTA CAGTCTGATG
GATAAATATC TGTTAGGTGC AGTTGTTCGC CGTGACGGTT CCAGCAGGTT TGGTGCTAAT
TACCGCTATG GTTGGTTCCC GGCTGTCAGC GCAGGCTGGC GTATTTCACA GGAAGCTTTC
CTGAAACAGG TATCCTGGAT CTCAGACTTA AAGATCAGAG GTGGTTATGG CGTTATGGGG
AATCAGCTCA ACGTAACTCC TGCGAATGCA TTTACCCAGT ATGGTCTTAA CAAGGGATCT
TCTTTCTATG ATATTGGTGG AACGTCGAAT ACCATTAACT CAGGTTTCTT ACAGACTTAC
ATCGGTAACC CGAACGCTAA GTGGGAAAAC AATATCAATA TGAATATTGG TATTGATGCG
ACGCTCTTTA AAGGTAAACT GGAAATCAAC GCTGATTACT ATCAGAAACG TGTGGAAGAC
CTGTTATTCA AACCTGAACT GGCTGCAACT GCCGGACGTC CGACACCTCC TGATGTGAAC
ATTGCGGAAA TGAAGAACCA GGGTATTGAT CTCGGCATCA ACCTGGTAAA TCTTAATCTG
TCAAAAGATC TGATCTTAAC ACTGGGTGCT ACGTTTACAA GCTATTCCAA CAAGATCGTG
AATGTATCTG GTGATGCGCC GTACTTCGAT CTGGAAGCAC GTCGTTTCAA CGGTAATTTC
ATTATCCGTA ATGCGGTAGA TCATCCGATT TCCAGTTTCT ACGGTTATAA AACCGTTGGT
TTCTGGAATT CTGCTCAGGA AGTTGCAACA GCAAATGATA ATGCACAGAA AGCGACCAAC
AATCCTAATG CAGTTTACCA GACTGGTATT GGCGTGGGAC GCTTCCGTTA TCAGGATACA
AACGGTGATG GTATCATCAC TGAGGCGGAC CGCACCTTCC TTGGTAACCC AAGCCCTGAC
TTCAGTTATG GTCTGAACAT CGAACTGAAA TATAAAGGCT TCGATTTCAC GGCGTTCTTC
TACGGTACGC AGGGTAATGA AATCTGGAAT CAGGTACGCT GGTGGACTGA CTTCTATCCA
TCTTTCGCAG GTGCGAAAAG TAAAACTGCG CTGTATGACT CATGGAGACC TGACCATCAG
AATGCAAAAG CACCTATCCA GGAGAACGAA GGATCTTTCA GTACCAATAC AGTTCCTAAC
TCTTTCCTCG TAGAAAATGG TTCTTATCTG CGTGCGAAGA ACCTGATGTT AGGCTATACA
CTGCCAAAAG CATTGTTAAA CCGCGTGGGT ATTGAGAAAT TCCGCATTTA CGTACAGGCT
GCAAACCTGT TCACTATTAC CAAATACACG GGTATTGATC CTGAGATTAC AGGTAGTACG
CAGGCATTTG GTCTGGACGA GGGAGCTTAT CCTAACCAAC GTCAGTTCCT GGTGGGCGTT
AATGTTGGCT TCTAA
 
Protein sequence
MKRHVYRTFA CCWLLLLLFA SAAFAQTKIT GKVTDEASGN PLPGVTVAVK NSGKGTATDP 
AGNFSVTAKK GETLVFSFVG YTQQEFVLGE ATTVNIVLSE KVGSLDEVVV TGYATQKKKD
LTGAVSVVNV DQISRQPTAQ VSNQLQGQVS GITVLGSGQP GQEPQVRIRG VNTFGNNTPL
YVIDGVPTQN IADLNPNDVA SMQVLKDAGS ASIYGARAAN GVVIVTTKRG KADGKVRVTY
DGYYGTQRPK GGNVWDILNS QEMADLKWMA LKNTNPNVVY NDGLYGTGAT PRLPDYIAPG
GLMEGDPNVN PSKYFVDPNY KTPADLDKFY RITRANKQGT DWFHEIFKPA SITSHNISVG
GGGEQGAYFL SFNYFDQKGT LQNTYLKRYS IRSNSYYNVS KHVRIGENMA FSVIDNPRIT
ALTEGSGIGM AFREQPIIPV HDINGNFAGS FSTNGAQLGN ARNPVAIQDR TRDNRGLINR
LLGSVYGEVD FLKYFTFRTT FGGEIYSGYT HSFTYPEYEN AENNKVNSYT ETSINSRNYT
WTNALTYAQT INSIHNIKVV AGTEAYDNRD RFLTATTQNY FSFDPDFTNL GSGTGTMNHS
STNGTDGLFS IFGRLDYSLM DKYLLGAVVR RDGSSRFGAN YRYGWFPAVS AGWRISQEAF
LKQVSWISDL KIRGGYGVMG NQLNVTPANA FTQYGLNKGS SFYDIGGTSN TINSGFLQTY
IGNPNAKWEN NINMNIGIDA TLFKGKLEIN ADYYQKRVED LLFKPELAAT AGRPTPPDVN
IAEMKNQGID LGINLVNLNL SKDLILTLGA TFTSYSNKIV NVSGDAPYFD LEARRFNGNF
IIRNAVDHPI SSFYGYKTVG FWNSAQEVAT ANDNAQKATN NPNAVYQTGI GVGRFRYQDT
NGDGIITEAD RTFLGNPSPD FSYGLNIELK YKGFDFTAFF YGTQGNEIWN QVRWWTDFYP
SFAGAKSKTA LYDSWRPDHQ NAKAPIQENE GSFSTNTVPN SFLVENGSYL RAKNLMLGYT
LPKALLNRVG IEKFRIYVQA ANLFTITKYT GIDPEITGST QAFGLDEGAY PNQRQFLVGV
NVGF