| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7255 |
|---|
| Symbol | |
|---|
| ID | 8363449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 9068293 |
|---|
| End bp | 9070062 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644969389 |
|---|
| Product | protein of unknown function DUF885 |
|---|
| Protein accession | YP_003126856 |
|---|
| Protein GI | 256426203 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00409593 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.317417 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAGA AAAATTATGC CCTCCTGCTG GCTATAACAG TGTTTGCTGC TGCCTGCTCA
GGACCAGACA AAAAGACCGG AACAAGCGCT GGCACTACGG ATTCACTCCA CCAGCTCGTC
CAGCACTACT ACGATGAAAA GATGGAGTTT TTCCCCATGG ATGCTACCAT GAACGGAGAA
CATCAGTTCG ACGGCCTCCT GCAGATCGAT ATCAGCGATC GTTTCCGCTC CAGACTGGAC
AGCTTCTACA CACATTATCA GACAGCCTTG CAAAGTTTGG ATACAGCAGC GCTGAACGAA
AATGACCTTA TCAGCTATGC CATGCTGCAA AGAGAAGTCT CAATAGGTAA GGAAAGTTTC
CGCTATCCGG ACAACCTGAT GCCCATTCAG CAGTTCTGGG GACTTACACT GACCTTACCG
CAATTCGGTT CCGGTACAAG CGCACAGCCG TTTAAGAACA AAGCAGATTA TGAAAAGTTC
ATTCAACGCA TGAAAAGCTT CTCAGAATGG AGTGATACAG CGATAGCAAA CATGCGCCGC
GGTATGTCTC TTGGGTATGT TATACCCAAA GCCCTGGCCG TGAAGGTTGT ACCTCAACTG
GCCGACCTTT CAAAGAAAGA TACCACCAAC GTATTCTATA CCCCCTTACG CATGTTGCCT
GCCGGTCTGG ACACCGCAGA ACAACGCTCA CTTCGTGCCG CCTACACAGC TGCAATAGAA
GAATATGCAC TGCCTGCCTA CAGCAGACTG CACGAGTTCT TCGTCAAAGA ATACATCCCG
AGAACGCGTA CTTCCAGCGG TATAGATGCC TTACCACAAG GCAAAGACTG GTATGGTTAT
CTGATCAGAT ACTGGACCAC CACCGATCTC ACACCTGATG AAATCTTTGC TACCGGCGAA
CGTGAAGTAG CCCGTATCAG AAGAGAGATG GACTCTGTGA AAAACAGCAC CGGTTTTACA
GGAGACCTGC CGGCCTTTTT CAACTTCATC CGTACGGATA AACAATTCAA AATATTCACT
ACCCCATCTC AGATCCTGGA TACCTTCAGA GGAATAGAAG AGAAGATTAT GCCGTCCGTA
AAAGAACTGT ACGGTCATCT GCCCAAAACA AAATTTGAAG TACGCCAGAC GGAAGCCTTC
CGTGCTGCAT CTGCAAGCGC TGAATATATG CCAGGGGCGG CTGACGGTAG TCGCCCGGGC
GTGTTCTACG TACCTATCCT GGACGCCAAA ACATTCAACT ATACCGGCAT GGAATGCCTC
TTCCTGCATG AAGCCATTCC GGGCCACCAT TTCCAGACCT CTATCCAGCA GGAAAATGAT
TCCCTGCCTA AATTCCGACG CTTTACCTGG ATTGGTTCCT ATGGTGAAGG TTATGCACTC
TACTGCGAAG GATTAGGCAA AGAACTTGGA CTTTATACCA ATCCATACAG CTATTTCGGA
CACCTCTCAG ATGAGATACA CCGCGCAATC CGCCTGGTAG TGGATGTTGG TATGCACGCA
AAAGGATGGA CCCGTGAACA GGCTATTAAA TACATGATGG ATAATGAGCC ACTGAGTGAA
CAGGATGCAG TAGCGGAAAT CGAAAGATAT ATGGCAATAC CGGGTCAGGC ATTGTCGTAT
AAGATCGGCG AACTGAAGAT CAGGGAATTA CGTAGTAAAT ACAGCCAAAG TACTGGTTTC
AGTATCAAAG ATTTTCATGA TGAATTGTTA AAAGATGGCT GTGTACCACT GAATGTATTG
GAGGAAAAAA TGGCCAGAAG GTTCAAATAG
|
|---|
| Protein sequence | MPKKNYALLL AITVFAAACS GPDKKTGTSA GTTDSLHQLV QHYYDEKMEF FPMDATMNGE
HQFDGLLQID ISDRFRSRLD SFYTHYQTAL QSLDTAALNE NDLISYAMLQ REVSIGKESF
RYPDNLMPIQ QFWGLTLTLP QFGSGTSAQP FKNKADYEKF IQRMKSFSEW SDTAIANMRR
GMSLGYVIPK ALAVKVVPQL ADLSKKDTTN VFYTPLRMLP AGLDTAEQRS LRAAYTAAIE
EYALPAYSRL HEFFVKEYIP RTRTSSGIDA LPQGKDWYGY LIRYWTTTDL TPDEIFATGE
REVARIRREM DSVKNSTGFT GDLPAFFNFI RTDKQFKIFT TPSQILDTFR GIEEKIMPSV
KELYGHLPKT KFEVRQTEAF RAASASAEYM PGAADGSRPG VFYVPILDAK TFNYTGMECL
FLHEAIPGHH FQTSIQQEND SLPKFRRFTW IGSYGEGYAL YCEGLGKELG LYTNPYSYFG
HLSDEIHRAI RLVVDVGMHA KGWTREQAIK YMMDNEPLSE QDAVAEIERY MAIPGQALSY
KIGELKIREL RSKYSQSTGF SIKDFHDELL KDGCVPLNVL EEKMARRFK
|
|---|
| |