Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_7238 |
Symbol | |
ID | 8363432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 9045142 |
End bp | 9046494 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644969372 |
Product | MATE efflux family protein |
Protein accession | YP_003126839 |
Protein GI | 256426186 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.866766 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGACTA AATATCGTCA GTATTATAAA GACAATTTCC AACTGGCCTA CCCGGTCGTG ATCTCCCAGC TGGGACATAC CATGGTGGCT TTCTCTGATA CCATCGTCAT CGGGCATACC GGTGATGTAC CGCTGGCTGC CGTTGCATTG GGCAGCAGCC TCTTTTCTAT TTTTATGGTG ATAGGCATTG GTATGTCCTA TGGTCTTACG CCATTGATCG CACAGGAAAA CGGACGGAAA AACCTGTCCC GTTGCGGCTA TCTGCTGCGT CATAGTCTGG CAATCAACAT CCTGCTGGGT ATTTTATTAT CCACCGTTAT TATCATCGGT AGTAATCACC TGGATCTGCT CGGACAGGAA GAACGGGTAC GTGTGCTGGC TAAACCTTTC CTGCAATTAC TAGGCTTTTC ATTCTTCCCG CTGATGATCT TCCTGACCTT TAAACAGTTT GCCGAAGGAC TGGGATTCAC CCGGCAAGCC ATGAACATCA GTATCATCGG TAACGTATTG AATATCGTAC TGGGTATCAT CCTGGTATAT GGCCTGTTTG GCGCACCTAA AATGGGCGTA GTGGGGGTGG GGATTGCGAC CCTGACTGAT CGCACATTAA TGGGGGTGGC AATGGCCTGG TATGTATTGC GTTCTCCGCG TTTTAAGCCT TATCTGCAGG AATTCAGACA ACGTTACCTG TCCGGCGCAG CATTGAAACA ATTACTGGGT ATCGGTACAC CGGTAGCTTT ACAATATGTT TTTGAAATCA GCGCATTCAG CGGCGCAATT GTTATGGCAG GCTGGATCGG CGCCCGTGAA CAGGCTGCTC ATCAGATAGC CATTAACCTG GCATCAATTA CCTATATGAT GGCAAGCGGG ATCTCTGCTG CTGCCGGTAT AAAAAGTGGT AATCACTTTG GTGCCGAACA ATGGCGGGAC TTACGTTCTT CCGCCATTGC CAGTTATCAT ATGGTGCTTG TGATGATGGG CACTACCGCC CTGATTTTCA TGCTGGGATG CCGCCTGCTG CCCCTGATGT ATATCAGTGA TCCGCAGGTA GTGGATATCG CAGCACACCT GTTGATTATC GCGGCTTTCT TCCAGCTGTT TGACGGAACA CAGGTGGTAG GACTGGGTAT CTTACGCGGA CTGGGAGATG TACGGGTACC GACTGTAATC ACCTTACTTG CCTACTGGGG CCTGGGATTG CCTATTGGTT ATCTATTCGG TATTCACCTG AATTTTGGGA TACAGGGCAT CTGGTGGGGA CTGCTGATCG GATTGCTGAC CGCATCGATC CTGCTGTTCT TCCGCTTCCA GCATAAGACA AAAGCCGTAC TGGCGGGCGC ATTGGTAAAA TGA
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Protein sequence | MWTKYRQYYK DNFQLAYPVV ISQLGHTMVA FSDTIVIGHT GDVPLAAVAL GSSLFSIFMV IGIGMSYGLT PLIAQENGRK NLSRCGYLLR HSLAINILLG ILLSTVIIIG SNHLDLLGQE ERVRVLAKPF LQLLGFSFFP LMIFLTFKQF AEGLGFTRQA MNISIIGNVL NIVLGIILVY GLFGAPKMGV VGVGIATLTD RTLMGVAMAW YVLRSPRFKP YLQEFRQRYL SGAALKQLLG IGTPVALQYV FEISAFSGAI VMAGWIGARE QAAHQIAINL ASITYMMASG ISAAAGIKSG NHFGAEQWRD LRSSAIASYH MVLVMMGTTA LIFMLGCRLL PLMYISDPQV VDIAAHLLII AAFFQLFDGT QVVGLGILRG LGDVRVPTVI TLLAYWGLGL PIGYLFGIHL NFGIQGIWWG LLIGLLTASI LLFFRFQHKT KAVLAGALVK
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