Gene Cpin_7236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_7236 
Symbol 
ID8363430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp9043642 
End bp9044169 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content44% 
IMG OID644969370 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003126837 
Protein GI256426184 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGGA CTGACTCGGT AGACGCTTTT AACGAAGTGT ACAACCGTTA TTGGGACATA 
CTGTATCATA TTACCTTGAA ACGGCTGCAG GTGAAGGAAG TTGCTGAGGA GATCGTGCAG
GACACCTTCA TCATCCTTTG GGAAAAAAGG CATGATATCG AGATCTCCGT ACTGAAACAT
TACCTTTTTG CCATCACCCG TTACGCCGTA TTTCATTATC TCGCAAAGCA ACAGACGATT
GCTGCCCGTA TGAAAGCCCT GTCACATACG CCACAGTTGG CAGGTGGAAA TGCAGATCTG
GAAAACCTTG TCAGTGACCG TTTATTATTA CAGCTGATCG AAACCATCTC AAATGAATTG
CCGGAGAAAA GCAGGCAGGT GTTCCGGTAT AATAAATTGC TGGATCACTC TTTATTACAG
GCAGCAAAAA CTTTTGATAT ATCTCCCAAA ACAGCAGAAG GACATCTCAC GAAAGCCCTG
AAGACGCTAC GGGTGAAATT AAGTGCATTG TATAGTACCG TTCTCTGA
 
Protein sequence
MIRTDSVDAF NEVYNRYWDI LYHITLKRLQ VKEVAEEIVQ DTFIILWEKR HDIEISVLKH 
YLFAITRYAV FHYLAKQQTI AARMKALSHT PQLAGGNADL ENLVSDRLLL QLIETISNEL
PEKSRQVFRY NKLLDHSLLQ AAKTFDISPK TAEGHLTKAL KTLRVKLSAL YSTVL