Gene Cpin_7176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_7176 
Symbol 
ID8363370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8961881 
End bp8963512 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content45% 
IMG OID644969310 
ProductRagB/SusD domain protein 
Protein accessionYP_003126777 
Protein GI256426124 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGAA TTTCGAAAAT AGCAACATAT GCAGCGCTCG CATTACTTCC TGTATTTGGG 
AGCAGCTGTA CCGACTTGAC TGAAAATGTG TATGACCAGA TCGATACACG TAATTTCTAT
AACAATAAAG AAGAAGTAGT ATCGGCAGTA TTAAGACCAT ACACCCATGC GAATGCCTGG
GTAACGCCTG GTCAGAATGG ATGGTGGCGT TTGAGTGAGT TATCGGCAGA TCAGCTGGCA
TGGCCACAGA AAGGTCGTCA TGGTTATGAT GGTGGTAACT GGATACGTCT GCACTATCAT
ACCTGGTTGG TGGATGATGG TCCGATCCTG GACTGTTGGT ATTTAACATG GACAGGTTTG
GGCTTTTGTA CAACAGCTAT TGAGAATCTG GAACGTCGTG AGGCCGGTGA GATGGGTATT
ACTCAGGCGG AAAAAGATGC ATACGTGTCT GAGTTAAGGT TATTGCGTGC ATTCCACTAT
CTCCGTATCA TGGATATCTG GGGTAATGTG CCTATCGTGA CACAAGTAGG TATTCCTGTT
AGTCCACCTA CAGCAACGCG TAAAGAAGTA TTTGACTTTG TTGAAAAAGA GATCCTTGAT
CATATTGAAG ATGCGCCGTT GTTGAGTAAA GCGTTGATCG GACGTATGTC CAAAGCGGGT
GCTTATTCCA TGCTGGTAGA GCTGTATCTG AATGCGGAGA AATGGAGTGG TACACCAAGA
TGGGATGACT GTATCGCTGC TGCCAATAAA CTCATCAATG GTGAAGCGGG TGGTATGAAT
GGTACACTTG CGCTGGATAC TAATATCACA GATACTTATA AGCCGACCAA CGATCTGTCT
AAGGAAATCA TTTTTTCTAT AGCATATGAT TACCAGGTGG CAGATTTTAC ACCACAGTGG
ACCGGTGACT TCTATCACTT TAACCAAGGT CTTATCAATG GTAATGACCG TAATGGTAAT
GATGGTGTTG TTGTTATTCC TGGTGTGTAT ACCACTTTCA GCGATGCAGA TAAGCGTAAG
AAAGAATGGA TATCAGCAGG TCCGCAATGG AAATATGGTT CAGCCGATAC AATACCTGTA
ATTGCAAGTG GTGGTAACGA GTATAACGGC GAACAGCTGG TATTCGTTGA CAATATCCGT
AAGAACAAGC TTGGCAGCAC TACATCAGAT ATGACACAGG GTGAAGAAAA CAGCGGTGTT
CGTTTCAATA AATACAAACT GGGACCGATC AACGATCCTC ATTACAGAAG CACTGACTGG
GCTGTATATC GTCTGTCATG GGTATATTTT GCAAAGGCTG AGGCACTGAT GCGTAAGAAT
GGCGGAACAG CTACTCAGGA AGCGGTTGAC CTGGTGAATG CCTGTAAACA ACGTGCTTTT
GCGCCTGCAG TATGGGAGGC GAATAAGTAT ACTACTTCTA CGCTGACTAT GGATGAACTG
CTGGCCGAAC TGGGTCGTGA GTTTATCTTT GAAGGTTACC GTCGTCAGGA GCTGATCCGT
TGGAATAAGT TTACCACTGC TACCTGGTGG GATCACAGGG CTTCTGAGTC ATTCAGAGAA
CTTTTTGCAA TTCCTCAGGT ACAACGTGCA CTGAATGTTA ACCTGGAACA GAATCCTGGT
TATCCTAAAT AG
 
Protein sequence
MKRISKIATY AALALLPVFG SSCTDLTENV YDQIDTRNFY NNKEEVVSAV LRPYTHANAW 
VTPGQNGWWR LSELSADQLA WPQKGRHGYD GGNWIRLHYH TWLVDDGPIL DCWYLTWTGL
GFCTTAIENL ERREAGEMGI TQAEKDAYVS ELRLLRAFHY LRIMDIWGNV PIVTQVGIPV
SPPTATRKEV FDFVEKEILD HIEDAPLLSK ALIGRMSKAG AYSMLVELYL NAEKWSGTPR
WDDCIAAANK LINGEAGGMN GTLALDTNIT DTYKPTNDLS KEIIFSIAYD YQVADFTPQW
TGDFYHFNQG LINGNDRNGN DGVVVIPGVY TTFSDADKRK KEWISAGPQW KYGSADTIPV
IASGGNEYNG EQLVFVDNIR KNKLGSTTSD MTQGEENSGV RFNKYKLGPI NDPHYRSTDW
AVYRLSWVYF AKAEALMRKN GGTATQEAVD LVNACKQRAF APAVWEANKY TTSTLTMDEL
LAELGREFIF EGYRRQELIR WNKFTTATWW DHRASESFRE LFAIPQVQRA LNVNLEQNPG
YPK