| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7158 |
|---|
| Symbol | |
|---|
| ID | 8363352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8944303 |
|---|
| End bp | 8944839 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644969293 |
|---|
| Product | alkylhydroperoxidase like protein, AhpD family |
|---|
| Protein accession | YP_003126760 |
|---|
| Protein GI | 256426107 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGT TCAATGTTCC ATCAAGAGAA GAAGTAAGTG CCAACAATCA GACACTGTTT
GACAATCTGA AAAAAGGTCT GGGTAAAGTG CCTAACCTGT ATGCAACAAT GGCTTATTCT
GAAAATGCAT TGGCTACCTA CCTGGCATTA TCAACCGGTA AAACCTCATT GAAAGCAAAA
GAGAAGGAAG TAGTGAATCT GGTTGTAAGC CAGGTGAATG ATTGTGACTA CTGTCTGGCG
GCACACACTT ATATTGGTAA ACTGAACGGC TTTTCTGATG AACAGATCAT AGAGATCCGC
AAAGGTAGCG CCTCTTTCGA TCCTAAGCTG AACGCACTGG CTGCACTGGT TAAAAACCAG
GTGGAAAACA AGGGTAAAGT GGATCCTGCG CTGGTAGATG CATTCTTTGC TGCAGGTTTT
ACAAACGAAA ACCTGGTAGA TGTGATCATC GTGATTGGTG ATAAGGTAGT GACCAACTAT
CTGTATGCTG CAACGAAAGT GCCGCTTGAT TTCCCTGCTG CACCAGCATT ATCTTAA
|
|---|
| Protein sequence | MKTFNVPSRE EVSANNQTLF DNLKKGLGKV PNLYATMAYS ENALATYLAL STGKTSLKAK
EKEVVNLVVS QVNDCDYCLA AHTYIGKLNG FSDEQIIEIR KGSASFDPKL NALAALVKNQ
VENKGKVDPA LVDAFFAAGF TNENLVDVII VIGDKVVTNY LYAATKVPLD FPAAPALS
|
|---|
| |