| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7142 |
|---|
| Symbol | |
|---|
| ID | 8363336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8930082 |
|---|
| End bp | 8931668 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644969277 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003126744 |
|---|
| Protein GI | 256426091 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCATTC TTCAAGGTGT AACTTATACT CATCCCAACA GAGATATACT TTTTTCTGAT
ATCCATCTGA CTGTTAATAA ACAGGATAAA ATCGCTTTGA TCGGCAATAA CGGCGCCGGT
AAGTCTACTC TTTTAAAAAT CTTAGCCGGG GAATTACTCC CTTCTGCCGG GATCATCAAA
AAAGAGGTAA TACCCTATTA CATTCCTCAG TTATTCGGCC AGTATAATGA TTATACTGTG
GCGCAGGCGC TTCGCGTAGA AATGAAGATC AGCGCATTGC GCGAGATACT GGCAGGTAAT
GTAACGGAAG CGCATATGAC TTCACTGGAT GATGACTGGA CGATTGAAGA ACGTTGTCAG
GAGGCTTTTG CACACTGGCA GCTGGAAGAC GTCGATCTGA TGCAATCAAT GCGGACATTA
AGCGGCGGAC AGAAAACAAA AGTCTTTCTC GCAGGCATTG CCATACATCA GCCTGCACTG
GTATTGCTGG ATGAACCCAG TAATCACCTG GATGTGCAGG CGAGAAGTAT TTTATACGAT
TACATCTCTT CTACGACAGA TACACTTGTT GTGGTGAGCC ACGACAGGAC ACTGCTCAAT
TTTCTGGAGA CTGTTTTTGA ATTGACCAAA CGAGGTATTA CTGTTTATGG TGGTAATTAT
GAGTTTTATA CAGAACAGAA GATGATTGCC AGTGAAGCAC TGAACCAGGA TGTGAAGAGC
AAGGAAAAGG AATTGCGGAA AGCAAGAGAA ACGGAACGGG AGTCTATGGA GCGTCAGCAA
AAGCTGGATG CACGTGGTAA AAAGAAACAG GAGAAGGCAG GGCTACCAAC AATCTCCATG
AATACTTTCC GGAATAATGC AGAGAAGAGT AGTGCACGTA TGAAAGGTGT TCATACAGAA
AAGGTGGGTA ACATTTCTGA CGAGCTAAAT CAGTTGCGTA AGGAGTTGCC CGATATGGAC
AAAATGAAAA TGGATTTCGA CAATTCATCT CTGCACAAAG GAAAGATCCT GGTAACGGCA
AAGGAGGTGA ACTTCAGTTA CGGGGAACGT TTACTCTGGT CCATGCCGCT TAGTTTTCAG
ATCACCAGTG GCGAACGGAT TGTGATCCGT GGACATAACG GATCCGGTAA GACGACCCTG
ATCAGGATGT TGCTGGGAGA GCTGACACCA CAAACGGGCA CTATTGACAG GGCTACGGTA
AAGACCATTT ATATTGACCA GGATTATTCC CTGATAGATA ATAGTCTGAC TGTCTATGAA
CAGGCATCAC GGTACAACAA AACCGGTTTG CAGGAGCATG AAATAAAGAC AAGACTGAAC
CGCTTCCTGT TTACGAAGGA GTATTGGGAT AAGCCTTGTC AGGCTTTAAG TGGCGGAGAG
AAAATGCGCT TAATGCTTTG CTCACTGACC ATTGGTAACC AGGCGCCTGA TATAATCGTG
CTGGATGAAC CGACTAATAA CCTGGATATT CAGAATATTG AGATACTAAC TGCGGCGGTC
AATGAATATC AGGGTACGCT GATCGTTATC AGTCATGATG AATACTTTCT GGGTGAGATT
GATATAGGGC GGGAGATATT ATTGTAA
|
|---|
| Protein sequence | MLILQGVTYT HPNRDILFSD IHLTVNKQDK IALIGNNGAG KSTLLKILAG ELLPSAGIIK
KEVIPYYIPQ LFGQYNDYTV AQALRVEMKI SALREILAGN VTEAHMTSLD DDWTIEERCQ
EAFAHWQLED VDLMQSMRTL SGGQKTKVFL AGIAIHQPAL VLLDEPSNHL DVQARSILYD
YISSTTDTLV VVSHDRTLLN FLETVFELTK RGITVYGGNY EFYTEQKMIA SEALNQDVKS
KEKELRKARE TERESMERQQ KLDARGKKKQ EKAGLPTISM NTFRNNAEKS SARMKGVHTE
KVGNISDELN QLRKELPDMD KMKMDFDNSS LHKGKILVTA KEVNFSYGER LLWSMPLSFQ
ITSGERIVIR GHNGSGKTTL IRMLLGELTP QTGTIDRATV KTIYIDQDYS LIDNSLTVYE
QASRYNKTGL QEHEIKTRLN RFLFTKEYWD KPCQALSGGE KMRLMLCSLT IGNQAPDIIV
LDEPTNNLDI QNIEILTAAV NEYQGTLIVI SHDEYFLGEI DIGREILL
|
|---|
| |