| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7051 |
|---|
| Symbol | |
|---|
| ID | 8363243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8823027 |
|---|
| End bp | 8825279 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644969184 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_003126653 |
|---|
| Protein GI | 256426000 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.195009 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACAG TGGTAGTAAA ACAATATAAT CTGGACGAGG AACAGGAAAA GAAAGAGATC
GTTCGTCATT ACCGCGCTTT ACTGAAGTCG CTCAAACCCC GTTTAAAGAA AGGAGACCGC
GAACTGGTGC GTACTGCCTT TGAAATGGCG GCCGATGCAC ACAAGGAAAT GCGCCGGAAA
TCCGGTGAGC CATACATCTT ACATCCCCTC GCTGTAGCGC AGATCTGCGT TGAAGAGATT
GGTTTGGGTG TACGTTCCGC TATTTGTGCC CTGCTGCATG ATACTGTGGA AGACACTGAA
GTCACTCTGG AGGACGTAGA AAGAGCGTTC GGGCCTGAAA TAGCCCATAT CGTAGACGGT
CTGACCAAAA TATCGACCGT TATCGACTCT AACACGAGTA CCGCCCAGGC GGAAAACTTC
AAAAAAATAC TGCTCACACT GGCGGATGAC CCCAGGGTGA TACTGATAAA ACTGGCAGAC
AGGATGCATA ATATGCGTAC CCTGGATAGT ATGAGCCGTG AAAAGCAGCT CAAAATAGCC
TCGGAGACCG TATTTATCTA TGCCCCCCTG GCGCACCGTC TTGGTTTGTA CAACATCAAA
TCGGAGATGG AAGACCTTTC CATGAAGTAC ACCGAGCAGC AGACCTACCG GGAAATCGCT
AAAAAGCTGA AGGAAACCAA GCGTGAGCGT ACCCGTTACA TCAACGAGTT TATCAAACCT
ATCAAGGAGG TATTGCAGGA GGAAGGGCTG AACTTCGAGA TCTTTGGCCG TCCGAAATCC
ATACACTCCA TCTGGAATAA GATCAAAAAG AAGGGCGTCA CCTTTGAAGA GGTATATGAC
CTTTTTGCGA TCCGTATTAT CATGGACTCC CCTTTGGAGA AGGAGAAGTC AGACTGCTGG
AAGGTATATT CCATCATTAC GGATTTTTAT CATCCCAGCC CTGAGCGTAC GCGCGACTGG
CTTAGTAATC CTAAATCCAA CGGGTATGAA GCCCTGCACG TGACCGTAAT GGGGCCACAG
GGTAAATGGG TGGAAGTACA GATCCGTACC AAGCGTATGA ACGATTACGC AGAGAAAGGT
CTGGCTGCCC ACTGGCGTTA TAAGGAGGGC AGTGCCCAGA GCGCCAGCAC GGAGTCTAAA
TTTGATCAGT GGTTCACCCA GATCAGGGAG ATCCTGAACA ACCCGGATTC CAATACGCTG
GACTTCCTGG CTGACTTTAA GAGCAACCTC TTTACAGAAG AGATCTATGT ATATACACCG
AAAGGTGACC TGAAGATATT GCCGGTTAAT TCTACCGCCC TGGATTTTGC TTATTCGATC
CATAGTGCGG TGGGTAATAA GTGTATCGGG GCCAAGGTGA ACTACAAACT GGTGCCTATC
AGCCATAAGC TGCGCAGCGG AGACCAGGTA GAGATCATTA CTTCCAATAA ACAGAAGCCT
ACAGAGGACT GGCTGAACTA CGCACTGACT GCCAAGGCAA AATCCAAGAT CAAGGATGCG
TTGAAGGAAG AAAAGCGGAA AGTGGCCATG GATGGTAAGG ATGTGCTGGA GCGTAAGCTG
GACCACATGA AGATTGCCAA CAGCCAGCAT AATATCAATG AGCTGGTACA GTACTATAAA
CAACCTTCGC CGCTGGACCT GTATTACCAG ATCGCTGTCA AGAACATCGA CCTGAAAGAG
CTGAAGCAGT TCAATGTACT GGGAGATAAA CTGGAAGCGC CTAAACCAGT CGCCTTAAAA
CAACCGGAAC ATATTTCTGA AGATCACCTG AAACATATGA TCCCCGCCAA GAAAGACGCG
GAACTGATCA TTTTCGGGGA AAGTTCAGAT AAGATCGCTT ATAAGCTGGC TAACTGTTGC
CGTCCGATCC CGGGCGATGA CGTTTTTGGT TTCATTACCG CCAGTGAAGG GCTGAAAATA
CACCGTACCA ACTGTCCGAA CGCCGCTCAG CTGCTGGCTA ACTATGGCCA CAGGGTCGTA
AAAACCAAGT GGGTGAAGAA CCGGGAGATC TCCTTCCTGA CCGGGCTCCG GATTGTGGGA
ATGGACGATG TGGGAGTTAT CCACAAGATC ACCAACGTTA TTTCCGGTGA ACTCCGGGTA
AATATTGCAG GTCTGACCAT CGAATCCCGT GAAGGACTCT TTGAAGGCCT TATCAAGGTG
TTCGTACACG ATAAGGAGGA ACTGGATGAA CTGTTCGAAA AACTGAAGAA ACTGGATGGT
ATTCAGTCCG TAAGCCGCCT GGAGGACGAG TGA
|
|---|
| Protein sequence | METVVVKQYN LDEEQEKKEI VRHYRALLKS LKPRLKKGDR ELVRTAFEMA ADAHKEMRRK
SGEPYILHPL AVAQICVEEI GLGVRSAICA LLHDTVEDTE VTLEDVERAF GPEIAHIVDG
LTKISTVIDS NTSTAQAENF KKILLTLADD PRVILIKLAD RMHNMRTLDS MSREKQLKIA
SETVFIYAPL AHRLGLYNIK SEMEDLSMKY TEQQTYREIA KKLKETKRER TRYINEFIKP
IKEVLQEEGL NFEIFGRPKS IHSIWNKIKK KGVTFEEVYD LFAIRIIMDS PLEKEKSDCW
KVYSIITDFY HPSPERTRDW LSNPKSNGYE ALHVTVMGPQ GKWVEVQIRT KRMNDYAEKG
LAAHWRYKEG SAQSASTESK FDQWFTQIRE ILNNPDSNTL DFLADFKSNL FTEEIYVYTP
KGDLKILPVN STALDFAYSI HSAVGNKCIG AKVNYKLVPI SHKLRSGDQV EIITSNKQKP
TEDWLNYALT AKAKSKIKDA LKEEKRKVAM DGKDVLERKL DHMKIANSQH NINELVQYYK
QPSPLDLYYQ IAVKNIDLKE LKQFNVLGDK LEAPKPVALK QPEHISEDHL KHMIPAKKDA
ELIIFGESSD KIAYKLANCC RPIPGDDVFG FITASEGLKI HRTNCPNAAQ LLANYGHRVV
KTKWVKNREI SFLTGLRIVG MDDVGVIHKI TNVISGELRV NIAGLTIESR EGLFEGLIKV
FVHDKEELDE LFEKLKKLDG IQSVSRLEDE
|
|---|
| |