Gene Cpin_7045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_7045 
Symbol 
ID8363237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8816059 
End bp8816565 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content46% 
IMG OID644969178 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003126647 
Protein GI256425994 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGCCT ACGAGTGTAT CTACAACAAG TACTGGCCGC TGTTATATGG CTATGTGTAT 
AATCGCCTGA AATCAAAGGA AATAACGGAA GAAATTGTCC AGGAGGTATT CTTCTCTCTC
TGGAACAGAC GGGCAGCGCT GCAGCTCACA CAGACACTCT CTGCCTATCT TTATACGGCT
GTCAAATATC AGATCTTCAA TTACATGAAG GCCGATAGGG TACGGAAAAC CTATGCGGGT
GCTTTTTCCC GCTATAACGA ACAGCTGCAG GACAACTCGA ATGAAGAATA CATGACCTAT
GCTGACCTGG CAAATGCCGT AGAAAAGGAA GTTTCCCGCC TGCCTGAAAA GTGTCAGCAA
GTGTTCAGAA TGAGCCGGAA TGAGCATCGC TCTATCCAGG ATATCGCTGC TGCTTTAAAT
ATCTCTCACA AAACGGTAGA AAACCATCTG ACAAAAGCCC TGAAGCACCT GAGACTGGCT
TTCCGGGAAT ATTTCTGGCT TTTTTAG
 
Protein sequence
MAAYECIYNK YWPLLYGYVY NRLKSKEITE EIVQEVFFSL WNRRAALQLT QTLSAYLYTA 
VKYQIFNYMK ADRVRKTYAG AFSRYNEQLQ DNSNEEYMTY ADLANAVEKE VSRLPEKCQQ
VFRMSRNEHR SIQDIAAALN ISHKTVENHL TKALKHLRLA FREYFWLF