Gene Cpin_6871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6871 
Symbol 
ID8363063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8602017 
End bp8603231 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content48% 
IMG OID644969004 
ProductDNA-directed DNA polymerase 
Protein accessionYP_003126473 
Protein GI256425820 
COG category[L] Replication, recombination and repair 
COG ID[COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0631256 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTCTT TGCAACACAG GTCCATCGCT CATTTCGACA TGGATAGCTT CTTCGTATCA 
GTGGAATGCA GGGACGATAA CAGCCTGAAA GGAAAACCAC TGCTTGTCGG CGGTATGAGT
GACCGGGGCG TTGTAGCTGC CTGCAGTTAC GAAGCCCGCC GCTATGGGAT TCATTCGGCC
ATGCCCATGA AGGTTGCACT TAAATTGTGC CCGCACGCCA TCGTCAGAAG AGGCGACGTG
GAAAAATACA GCCAGATCTC CCGTGAAGTA ACCGGACTCA TAGCTGATAA AGCCCCCCTC
TACGAGAAAT CATCCATAGA TGAATTCTAT CTCGACCTCA CCGGTATGGA CAAATTCTTC
GGTTCTATGA AATGGACCAC CGAACTACGC CAGTATATTA TGCGGGAAAC ACAACTGCCG
GTTTCCTTCG GGCTCGCCTC CAACAAAATG ATCTCTAAAG TGGCTACCAA CGAGGCTAAA
CCCAATGGTC AGCTGGAAAT ACTCTTTGGC AATGAAAAAT CTTTCCTCGC TCCTATGCCG
GTGGAAAAAC TCCCCATGGT GGGTAAGGAA ACAGCCAGCC AGCTGCGCCG TCGCGGAGTA
GAAACCGTAA AAACCCTGAG CGAAATACCG CTCTCCCTGC TGGAAGCCTG GCTGGGGAAG
AATGGTATCT CCCTCTGGAA CAAAGCCAAT GGTATTGACG AGTCTCCCGT TGTGCCCTAC
CATGAACAAA AGTCTATCTC TACCGAAAAC ACCTTCCATA CCGACACCAT CGATATGCAG
TTCATACATG CGGAACTCGT GCGTATGACG GAAAAAATCG CCTTCGAACT CAGACAACAG
GATAAACTCA CCGGTTGTGT CACCGTCAAA ATCCGCTATT CTGATTTTGA AACCGTAACA
AAACAGATGA CCATACCCTA TTCCAGCAGC GATCATGTGC TATTGGAAAA GGTAAAAGAA
CTATTTACTA AACTATATGA CAGAAGACTC CTTATCCGTC TGATAGGGGT ACGCTTCAGT
CACCTGGTAC ATGGTAACCA TCAGATCAGC CTCTTTGATG ATACACAGGA AATGATCTCC
CTTTACCAGG CCATAGACAA TATAAAAAAC CGCTTCGGAT GGCAATACCT GATGCGGGGT
ACCAACGCCG CTCCCCAGTC AAAAAAAGGG GACATAAAAC AGCGGGATAT CATGCCGTAT
CCAAAAGTGA GATAA
 
Protein sequence
MISLQHRSIA HFDMDSFFVS VECRDDNSLK GKPLLVGGMS DRGVVAACSY EARRYGIHSA 
MPMKVALKLC PHAIVRRGDV EKYSQISREV TGLIADKAPL YEKSSIDEFY LDLTGMDKFF
GSMKWTTELR QYIMRETQLP VSFGLASNKM ISKVATNEAK PNGQLEILFG NEKSFLAPMP
VEKLPMVGKE TASQLRRRGV ETVKTLSEIP LSLLEAWLGK NGISLWNKAN GIDESPVVPY
HEQKSISTEN TFHTDTIDMQ FIHAELVRMT EKIAFELRQQ DKLTGCVTVK IRYSDFETVT
KQMTIPYSSS DHVLLEKVKE LFTKLYDRRL LIRLIGVRFS HLVHGNHQIS LFDDTQEMIS
LYQAIDNIKN RFGWQYLMRG TNAAPQSKKG DIKQRDIMPY PKVR