| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6868 |
|---|
| Symbol | |
|---|
| ID | 8363060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8599712 |
|---|
| End bp | 8600464 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644969001 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_003126470 |
|---|
| Protein GI | 256425817 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.815043 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.198687 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATAG TATGCCGCAA TCTGAAGTTC CTGCGCAAGC AGAAGGGCTG GACGCAGCAG
GAGTTTGCTG ATAAATTAGG TATCAAACGC TCCCTGCTCG GTGCTTACGA AGAAGAACGC
GCAGAACCCC GCACAGAAGT ATTGGAACTG GTCAGTGACA TGTTCCGTAT ATCCATTGAT
GATTTGTTAC GTCGCGATGT AGGCTCTCAG AAGGAAAGTT TCCTGGAGAA ACGCAGGCAG
CAGAAAATGG GCAGCGACCG GCAGGTCATT GAGTTCGTCC CCGTAAAAGC AGCCGCTGGT
TATCTCGCCG GCTATAATGA TGATGAATTC ATCGAAGAGC TGAACACCTT TACTTTGCCG
ATGATGGGCG CCGGTAATTA CAGGGCGTTT GAAATAGCTG GGGATTCCAT GCTGCCAACA
CCTTCCGGTT CCGTGATCGT ATGTCACAAA GTAGATGGCT GGGATGAGAT CCGCAACAAT
GAAGCTTATA TCGTTGTGAC TAACCGCGAG GGTATTGTGT ATAAACGTAT CCTCAAGACC
AACCGTAGTA AAAGTAAGAT CACGCTTGTT TCTGATAATC CGCAGTATGA ACCTTATGCG
GTAGGTATGG AAGATGTACT GGAACTCTGG CAGTCAGACG CTGTTATCAG CAAAAGTGGT
CAGCAGAGCC GTCTTAGTGT GAATCATCTT GCTGATATGG TAAGCCACCT GCAGGATCAG
GTGAGTATGC TGAAGAAGCG TATTAAAGAC TGA
|
|---|
| Protein sequence | MSIVCRNLKF LRKQKGWTQQ EFADKLGIKR SLLGAYEEER AEPRTEVLEL VSDMFRISID
DLLRRDVGSQ KESFLEKRRQ QKMGSDRQVI EFVPVKAAAG YLAGYNDDEF IEELNTFTLP
MMGAGNYRAF EIAGDSMLPT PSGSVIVCHK VDGWDEIRNN EAYIVVTNRE GIVYKRILKT
NRSKSKITLV SDNPQYEPYA VGMEDVLELW QSDAVISKSG QQSRLSVNHL ADMVSHLQDQ
VSMLKKRIKD
|
|---|
| |